Sodium in PDB 8qby: Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs

The structure of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Iron	(Fe)	28 atoms
Calcium	(Ca)	4 atoms

The binding sites of Sodium atom in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs (pdb code 8qby). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs, PDB code: 8qby:

Sodium binding site 1 out of 1 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ G:Na804 b:36.1 occ:1.00 OE1 G:GLN115 2.4 34.1 1.0 O G:CYS208 2.6 25.0 1.0 O G:VAL210 2.6 23.6 1.0 O G:HOH1030 2.7 34.8 1.0 O G:ILE205 3.1 33.8 1.0 CD G:GLN115 3.4 24.2 1.0 O G:LEU213 3.4 44.2 1.0 C G:CYS208 3.6 26.5 1.0 C G:VAL210 3.7 18.4 1.0 CB G:CYS208 3.7 18.2 1.0 NE2 G:GLN115 3.8 27.9 1.0 O G:HOH1067 3.8 34.2 1.0 CA G:CYS208 4.2 15.6 1.0 N G:VAL210 4.2 26.1 1.0 C G:ILE205 4.3 27.9 1.0 SG G:CYS208 4.3 22.9 1.0 CE Q:MET13 4.3 18.2 1.0 C G:PRO209 4.5 22.2 1.0 N G:GLY211 4.5 18.4 1.0 CA G:GLY211 4.5 15.2 1.0 CA G:VAL210 4.5 21.7 1.0 C G:LEU213 4.5 25.1 1.0 N G:CYS208 4.6 14.2 1.0 N G:PRO209 4.6 21.6 1.0 CG G:GLN115 4.6 20.0 1.0 O G:ASP206 4.9 29.0 1.0 CA G:PRO209 4.9 18.4 1.0 CA G:ILE205 4.9 24.4 1.0 O G:PRO209 4.9 28.3 1.0

B.S.Ivanov, H.R.Bridges, J.Hirst, O.D.Jarman. Respiratory Complex I From Paracoccus Denitrificans To Be Published.