Sodium in PDB 8q21: Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina)

The structure of Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina), PDB code: 8q21 was solved by P.Zeides, K.Bellmannn-Sickert, R.Zhang, C.J.Seel, V.Most, C.T.Schroeder, M.Groll, T.Gulder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.30
Space group	F 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	306.74, 306.74, 306.74, 90, 90, 90
R / Rfree (%)	21 / 23.3

The binding sites of Sodium atom in the Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina) (pdb code 8q21). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina), PDB code: 8q21:

Sodium binding site 1 out of 1 in the Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na902 b:88.0 occ:1.00 O A:LYS391 2.8 113.3 1.0 OD1 A:ASP393 3.2 106.1 1.0 O A:PHE389 3.4 112.5 1.0 C A:LYS391 3.9 114.8 1.0 C A:GLN390 4.0 116.9 1.0 O A:GLN390 4.0 116.5 1.0 N A:LYS391 4.2 116.4 1.0 O A:GLN399 4.2 120.3 1.0 CA A:GLN399 4.2 117.0 1.0 OD2 A:ASP396 4.3 99.6 1.0 CG A:ASP393 4.3 105.5 1.0 C A:PHE389 4.3 112.6 1.0 O A:GLN398 4.4 111.6 1.0 CA A:GLN390 4.4 116.8 1.0 N A:ASP393 4.5 109.1 1.0 CG A:GLN399 4.6 118.7 1.0 CA A:LYS391 4.7 115.1 1.0 N A:GLN390 4.7 115.4 1.0 C A:PRO392 4.8 111.1 1.0 C A:GLN399 4.8 116.9 1.0 CB A:GLN399 4.8 117.6 1.0 N A:PRO392 4.8 111.9 1.0 CA A:PRO392 4.9 110.9 1.0 CA A:ASP393 4.9 107.3 1.0 OD2 A:ASP393 4.9 102.0 1.0

P.Zeides, K.Bellmannn-Sickert, R.Zhang, C.J.Seel, V.Most, C.T.Schroeder, M.Groll, T.Gulder. Unraveling the Molecular Basis of Substrate Specificity and Halogen Activation in Vanadium-Dependent Haloperoxidases To Be Published.