Sodium in PDB 8pzy: Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound

Enzymatic activity of Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound

All present enzymatic activity of Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound:
3.4.11.1; 3.4.11.10;

Protein crystallography data

The structure of Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound, PDB code: 8pzy was solved by M.C.Simpson, C.M.Czekster, C.J.Harding, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	52.75 / 1.97
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	87.53, 183.03, 316.53, 90, 90, 90
*R / R_free (%)*	17.6 / 20.4

Other elements in 8pzy:

The structure of Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound also contains other interesting chemical elements:

Manganese

(Mn)

12 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound (pdb code 8pzy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound, PDB code: 8pzy:

Sodium binding site 1 out of 1 in 8pzy

Go back to

Sodium Binding Sites List in 8pzy

Sodium binding site 1 out of 1 in the Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na611 b:59.9 occ:1.00	O	A:HOH770	2.9	38.1	1.0
	MN	A:MN609	2.9	33.4	1.0
	OD1	A:ASP310	3.1	38.0	1.0
	O	A:HOH915	3.3	37.8	1.0
	O	A:THR396	3.6	38.2	1.0
	OD2	A:ASP292	3.6	33.0	1.0
	CG	A:ASP310	3.7	36.4	1.0
	OD2	A:ASP310	3.8	35.0	1.0
	NZ	A:LYS287	3.9	34.5	1.0
	MN	A:MN610	4.1	34.6	1.0
	SD	A:MET307	4.1	42.5	1.0
	O	A:LEU397	4.4	41.6	1.0
	NZ	A:LYS299	4.4	33.5	1.0
	CG	A:ASP292	4.7	33.7	1.0
	C	A:THR396	4.7	35.3	1.0
	C	A:LEU397	4.9	39.9	1.0
	CE	A:LYS299	4.9	34.8	1.0
	OE2	A:GLU371	5.0	36.5	1.0
	CB	A:ASP292	5.0	35.9	1.0
	OG1	A:THR396	5.0	35.9	1.0

Reference:

M.C.Simpson, C.J.Harding, R.M.Czekster, L.Remmel, B.E.Bode, C.M.Czekster. Unveiling the Catalytic Mechanism of A Processive Metalloaminopeptidase. Biochemistry 2023.
ISSN: ISSN 0006-2960
PubMed: 37924287
DOI: 10.1021/ACS.BIOCHEM.3C00420

Page generated: Wed Oct 9 13:05:35 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy