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Sodium in PDB 8pyq: 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

Enzymatic activity of 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

All present enzymatic activity of 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.:
3.2.1.17;

Protein crystallography data

The structure of 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyq was solved by T.J.Mason, M.Carrillo, J.H.Beale, C.Padeste, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.60 / 1.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.2, 79.2, 38.2, 90, 90, 90
R / Rfree (%) 14.4 / 17.9

Other elements in 8pyq:

The structure of 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. (pdb code 8pyq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyq:

Sodium binding site 1 out of 1 in 8pyq

Go back to Sodium Binding Sites List in 8pyq
Sodium binding site 1 out of 1 in the 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:23.4
occ:1.00
 O A:SER60 2.4 22.8 1.0
O A:CYS64 2.4 21.8 1.0
O A:HOH372 2.5 32.2 1.0
O A:ARG73 2.5 27.0 0.7
OG A:SER72 2.5 28.0 1.0
O A:ARG73 2.5 29.2 0.3
O A:HOH335 2.6 27.4 1.0
CB A:SER72 3.3 27.8 1.0
C A:CYS64 3.5 20.1 1.0
C A:SER60 3.5 21.5 1.0
C A:ARG73 3.5 27.3 0.7
C A:ARG73 3.5 28.8 0.3
N A:ARG73 3.9 29.2 0.7
N A:ARG73 3.9 29.9 0.3
CA A:ASN65 4.0 21.6 1.0
N A:ASN65 4.1 20.0 1.0
CA A:SER60 4.1 18.7 1.0
C A:SER72 4.2 30.1 1.0
CB A:SER60 4.3 19.3 1.0
CA A:ARG73 4.4 29.3 0.7
CA A:ARG73 4.4 30.3 0.3
N A:CYS64 4.4 19.3 1.0
CA A:SER72 4.4 28.4 1.0
N A:ASN74 4.4 28.2 1.0
C A:ARG61 4.6 23.6 0.6
O A:ARG61 4.6 25.4 0.6
CA A:CYS64 4.6 18.5 1.0
CA A:ASN74 4.6 26.2 1.0
N A:ARG61 4.6 21.6 0.4
N A:ARG61 4.6 21.1 0.6
C A:ARG61 4.6 23.7 0.4
O A:SER72 4.7 31.8 1.0
N A:ASP66 4.7 21.5 1.0
CB A:THR69 4.7 23.3 1.0
O A:ARG61 4.7 25.3 0.4
CB A:ASN74 4.8 25.1 1.0
CL A:CL203 4.8 38.4 1.0
CB A:ASN65 4.8 23.6 1.0
CA A:ARG61 4.8 24.0 0.4
CA A:ARG61 4.8 24.2 0.6
N A:TRP62 4.9 23.4 1.0
OD1 A:ASN65 4.9 33.5 1.0
C A:ASN65 4.9 22.0 1.0
O A:THR69 4.9 26.7 1.0

Reference:

M.Carrillo, T.J.Mason, A.Karpik, I.Martiel, M.W.Kepa, K.E.Mcauley, J.H.Beale, C.Padeste. Micro-Structured Polymer Fixed-Targets For Serial Crystallography at Synchrotrons and Xfels To Be Published.
Page generated: Wed Oct 9 13:04:50 2024

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