Sodium in PDB 8ptd: The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin.

The structure of The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin., PDB code: 8ptd was solved by J.Whittaker, J.M.Felices Martinez, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.26 / 1.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.471, 147.665, 116.043, 90, 90, 90
R / Rfree (%)	17.2 / 19.2

The structure of The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin. also contains other interesting chemical elements:

Cobalt

(Co)

1 atom

The binding sites of Sodium atom in the The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin. (pdb code 8ptd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin., PDB code: 8ptd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:26.5 occ:1.00 H2 A:GOL404 3.3 46.2 1.0 H32 A:GOL404 4.1 35.6 1.0 C2 A:GOL404 4.1 38.5 1.0 HO3 A:GOL404 4.4 34.2 1.0 O2 A:GOL404 4.4 31.4 1.0 C3 A:GOL404 4.6 29.7 1.0 O A:HOH634 4.7 31.9 1.0 HM61 A:B12402 5.0 21.5 1.0 O3 A:GOL404 5.0 28.5 1.0

Sodium binding site 2 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:14.8 occ:1.00 O A:HOH647 3.1 26.0 1.0 N A:LEU50 3.3 15.1 1.0 N A:PHE65 3.4 15.9 1.0 N A:SER66 3.4 19.0 1.0 CA A:ASN63 3.5 19.9 0.5 C A:ASN63 3.6 23.7 1.0 CA A:ASN63 3.6 20.0 0.5 OD1 A:ASN63 3.6 33.1 0.5 CB A:PHE65 3.6 19.8 1.0 CA A:SER49 3.8 16.2 1.0 O A:LEU50 3.8 19.4 1.0 OG A:SER66 3.8 28.0 1.0 CB A:ASN63 3.9 21.2 0.5 CA A:PHE65 3.9 17.2 1.0 O A:ASN63 3.9 22.6 1.0 N A:TYR64 3.9 19.3 1.0 CB A:SER49 3.9 19.9 1.0 C A:SER49 4.0 16.8 1.0 C A:PHE65 4.1 19.1 1.0 CB A:SER66 4.1 25.5 1.0 CG A:ASN63 4.2 28.9 0.5 CB A:ASN63 4.2 20.7 0.5 CA A:LEU50 4.3 15.1 1.0 CB A:LEU50 4.4 16.7 1.0 CA A:SER66 4.4 20.6 1.0 C A:TYR64 4.4 18.2 1.0 C A:LEU50 4.5 20.9 1.0 O A:ASN62 4.7 27.1 1.0 CA A:TYR64 4.8 19.9 1.0 N A:ASN63 4.8 21.3 1.0 CG A:PHE65 4.8 19.8 1.0 O A:SER48 4.9 17.7 1.0

J.Whittaker, A.Guskov. The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin. To Be Published.