Sodium in PDB 8pjd: Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445

The structure of Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445, PDB code: 8pjd was solved by V.Cura, N.Troffer-Charlier, N.Marechal, L.Bonnefond, J.Cavarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.25 / 1.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	65.052, 115.98, 133.718, 90, 90, 90
R / Rfree (%)	17.1 / 18.9

The binding sites of Sodium atom in the Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445 (pdb code 8pjd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445, PDB code: 8pjd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na506 b:34.6 occ:1.00 OXT A:ACT504 2.5 28.4 1.0 O A:LYS383 2.6 24.4 1.0 HA A:GLN384 2.6 25.5 1.0 HA A:TRP354 2.7 26.5 1.0 OG1 A:THR373 2.8 20.8 1.0 HB A:THR373 2.9 26.2 1.0 HB2 A:TRP354 3.0 26.6 1.0 H1 A:ACT504 3.0 37.0 1.0 H2 A:ACT504 3.0 37.0 1.0 C A:ACT504 3.2 23.8 1.0 CH3 A:ACT504 3.2 30.9 1.0 HB3 A:TRP354 3.3 26.6 1.0 HG3 A:GLN384 3.3 29.1 1.0 CB A:THR373 3.3 21.9 1.0 HB3 A:TRP382 3.4 29.1 1.0 CB A:TRP354 3.4 22.2 1.0 CA A:TRP354 3.5 22.1 1.0 O A:THR373 3.5 23.0 1.0 C A:LYS383 3.5 23.5 1.0 CA A:GLN384 3.5 21.3 1.0 H A:PHE355 3.7 28.3 1.0 HB2 A:TRP382 3.8 29.1 1.0 N A:GLN384 3.9 23.5 1.0 O A:TRP382 4.0 23.7 1.0 O A:ALA353 4.0 20.9 1.0 CB A:TRP382 4.0 24.3 1.0 CG A:GLN384 4.2 24.3 1.0 HG21 A:THR373 4.2 26.6 1.0 H3 A:ACT504 4.2 37.0 1.0 C A:THR373 4.2 22.0 1.0 C A:TRP382 4.3 22.7 1.0 N A:PHE355 4.3 23.6 1.0 O A:ACT504 4.3 31.4 1.0 CB A:GLN384 4.4 22.9 1.0 NA A:NA507 4.4 27.5 1.0 CG2 A:THR373 4.4 22.2 1.0 H A:THR385 4.4 25.3 1.0 CA A:THR373 4.4 21.6 1.0 C A:TRP354 4.4 21.5 1.0 C A:GLN384 4.5 22.2 1.0 O A:HOH733 4.5 21.5 1.0 N A:TRP354 4.6 23.7 1.0 HB3 A:GLN384 4.6 27.4 1.0 N A:LYS383 4.6 21.5 1.0 HE21 A:GLN384 4.6 27.1 1.0 C A:ALA353 4.7 20.6 1.0 N A:THR385 4.7 21.1 1.0 CA A:LYS383 4.7 22.3 1.0 HG2 A:GLN384 4.7 29.1 1.0 H A:GLN384 4.8 28.2 1.0 HD2 A:PHE355 4.8 32.0 1.0 CG A:TRP354 4.8 20.6 1.0 CA A:TRP382 4.8 21.6 1.0 HG1 A:THR380 4.9 26.7 1.0 HA A:THR373 5.0 25.9 1.0 HG23 A:THR373 5.0 26.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na507 b:27.5 occ:1.00 OXT A:ACT504 2.3 28.4 1.0 O A:TRP382 2.3 23.7 1.0 O A:SER302 2.4 26.2 1.0 O A:HOH834 2.5 29.5 1.0 OG1 A:THR385 2.5 29.8 1.0 HG1 A:THR385 2.9 35.7 1.0 C A:ACT504 3.1 23.8 1.0 HB2 A:SER302 3.2 31.9 1.0 O A:GLN384 3.2 25.0 1.0 O A:ACT504 3.3 31.4 1.0 HA A:SER302 3.3 28.5 1.0 C A:GLN384 3.4 22.2 1.0 C A:SER302 3.4 28.1 1.0 C A:TRP382 3.5 22.7 1.0 CA A:SER302 3.7 23.8 1.0 N A:THR385 3.8 21.1 1.0 HB3 A:TRP382 3.8 29.1 1.0 HA A:GLN384 3.8 25.5 1.0 HA A:THR385 3.8 25.3 1.0 CB A:THR385 3.8 24.4 1.0 CB A:SER302 3.9 26.6 1.0 N A:GLN384 3.9 23.5 1.0 HG23 A:THR227 3.9 31.2 1.0 CA A:GLN384 3.9 21.3 1.0 HB2 A:LYS383 4.0 30.4 1.0 CA A:THR385 4.0 21.1 1.0 HA A:TRP382 4.1 25.9 1.0 H A:GLN384 4.1 28.2 1.0 C A:LYS383 4.2 23.5 1.0 O A:HOH835 4.2 36.4 1.0 H A:THR385 4.2 25.3 1.0 CA A:TRP382 4.3 21.6 1.0 HB A:THR385 4.3 29.3 1.0 HA A:THR227 4.4 28.8 1.0 NA A:NA506 4.4 34.6 1.0 HB3 A:SER302 4.4 31.9 1.0 HA A:ASN303 4.5 31.5 1.0 CH3 A:ACT504 4.5 30.9 1.0 CB A:TRP382 4.5 24.3 1.0 N A:LYS383 4.5 21.5 1.0 N A:ASN303 4.6 26.0 1.0 O A:LYS383 4.6 24.4 1.0 H2 A:ACT504 4.7 37.0 1.0 CA A:LYS383 4.7 22.3 1.0 CB A:LYS383 4.7 25.3 1.0 HG23 A:THR385 4.7 31.3 1.0 H A:CYS228 4.8 28.5 1.0 CG2 A:THR385 4.8 26.1 1.0 H A:HIS304 4.8 28.5 1.0 CG2 A:THR227 4.8 26.0 1.0 HD1 A:TRP382 4.9 28.4 1.0 OG A:SER302 4.9 28.6 1.0 OG1 A:THR227 4.9 26.6 1.0

V.Cura, N.Troffer-Charlier, N.Marechal, L.Bonnefond, J.Cavarelli. Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445 To Be Published.