Sodium in PDB 8otb: Clostridium Perfringens Chitinase CP4_3455

The structure of Clostridium Perfringens Chitinase CP4_3455, PDB code: 8otb was solved by Y.Bloch, S.N.Savvides, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.43 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.47, 109.03, 111.58, 90, 90, 90
R / Rfree (%)	15.8 / 17.5

The structure of Clostridium Perfringens Chitinase CP4_3455 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Clostridium Perfringens Chitinase CP4_3455 (pdb code 8otb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Clostridium Perfringens Chitinase CP4_3455, PDB code: 8otb:

Sodium binding site 1 out of 1 in the Clostridium Perfringens Chitinase CP4_3455


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Clostridium Perfringens Chitinase CP4_3455 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na705 b:30.0 occ:1.00 HE3 A:LYS406 2.8 27.6 1.0 HG2 A:GLU432 2.9 33.6 1.0 O A:HOH861 3.2 21.5 1.0 O A:HOH1302 3.3 42.5 1.0 O A:HOH1248 3.4 40.5 1.0 HD3 A:LYS406 3.4 26.1 1.0 HD2 A:LYS406 3.5 26.1 1.0 HA A:ALA429 3.5 23.9 1.0 CE A:LYS406 3.6 23.0 1.0 CD A:LYS406 3.7 21.7 1.0 HB3 A:GLU432 3.7 27.1 1.0 CG A:GLU432 3.8 28.0 1.0 CB A:GLU432 4.2 22.6 1.0 HB2 A:GLU432 4.2 27.1 1.0 HE2 A:LYS406 4.2 27.6 1.0 HB1 A:ALA429 4.2 24.6 1.0 HB2 A:ALA429 4.3 24.6 1.0 HZ2 A:LYS406 4.4 28.2 1.0 CA A:ALA429 4.4 19.9 1.0 HG3 A:GLU432 4.5 33.6 1.0 HH A:TYR296 4.5 24.6 1.0 CB A:ALA429 4.5 20.5 1.0 NZ A:LYS406 4.5 23.5 1.0 CD A:GLU432 4.6 35.3 1.0 OE1 A:GLU432 4.8 35.9 1.0 HZ1 A:LYS406 4.8 28.2 1.0 O A:HOH1061 5.0 27.2 1.0

Y.Bloch, S.N.Savvides. Clostridium Perfringens Chitinase CP4_3455 To Be Published.