Sodium in PDB 8ond: Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre

The structure of Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre, PDB code: 8ond was solved by S.G.Caulton, A.L.Lovering, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.14 / 2.50
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	65.308, 65.308, 319.187, 90, 90, 120
R / Rfree (%)	20 / 22.8

The structure of Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre (pdb code 8ond). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre, PDB code: 8ond:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1103 b:46.2 occ:0.33 O A:TYR993 2.1 48.8 1.0 CL A:CL1101 2.4 47.6 0.3 C A:TYR993 3.3 51.0 1.0 N A:TYR993 3.7 48.0 1.0 CA A:TYR993 4.1 48.2 1.0 N A:ASN994 4.4 44.3 1.0 CD2 A:TYR993 4.5 49.5 1.0 CG A:TYR993 4.5 47.9 1.0 CA A:ASN994 4.6 46.4 1.0 CB A:ASN994 4.7 43.7 1.0 C A:GLY992 4.8 51.6 1.0 CB A:TYR993 4.9 48.4 1.0 CE2 A:TYR993 4.9 46.7 1.0 CD1 A:TYR993 4.9 48.1 1.0

Sodium binding site 2 out of 2 in the Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the C-Terminal Domains of the Bdellovibrio Bacteriovorus BD2133 Fibre within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1103 b:52.9 occ:0.33 O B:TYR993 2.2 48.1 1.0 CL B:CL1101 2.4 51.2 0.3 C B:TYR993 3.4 54.9 1.0 N B:TYR993 3.7 50.3 1.0 CA B:TYR993 4.1 48.9 1.0 N B:ASN994 4.4 46.9 1.0 CD1 B:TYR993 4.5 49.0 1.0 CG B:TYR993 4.6 48.2 1.0 CA B:ASN994 4.6 48.1 1.0 CB B:ASN994 4.7 44.0 1.0 C B:GLY992 4.8 53.6 1.0 CE1 B:TYR993 4.8 49.1 1.0 CB B:TYR993 4.9 49.0 1.0 CD2 B:TYR993 5.0 47.1 1.0 CA B:GLY992 5.0 48.3 1.0

S.G.Caulton, A.L.Lovering. Structure of the C-Terminal Beta Helix Domain of the Bdellovibrio Bacteriovorus BD3182 Fibre To Be Published.