Sodium in PDB 8olt: Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A

All present enzymatic activity of Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A:
7.1.1.2;

The structure of Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iron	(Fe)	28 atoms
Zinc	(Zn)	1 atom

The binding sites of Sodium atom in the Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A (pdb code 8olt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A, PDB code: 8olt:

Sodium binding site 1 out of 1 in the Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mitochondrial Complex I From Mus Musculus in the Active State Bound with Piericidin A within 5.0Å range: probe atom residue distance (Å) B Occ G:Na804 b:34.8 occ:1.00 O G:LEU208 2.4 33.7 1.0 O G:VAL205 2.6 30.5 1.0 O G:ILE200 2.7 35.9 1.0 O G:HOH915 3.1 34.0 1.0 O G:CYS203 3.1 32.1 1.0 O G:HOH901 3.2 33.5 1.0 CB G:CYS203 3.5 32.1 1.0 C G:LEU208 3.6 33.7 1.0 OE1 G:GLN110 3.6 31.4 1.0 C G:ILE200 3.7 35.9 1.0 C G:VAL205 3.9 30.5 1.0 C G:CYS203 4.0 32.1 1.0 SG G:CYS203 4.0 32.1 1.0 NE2 G:GLN110 4.0 31.4 1.0 CD G:GLN110 4.1 31.4 1.0 CA G:ILE200 4.1 35.9 1.0 CA G:CYS203 4.2 32.1 1.0 CG2 G:THR209 4.3 34.7 1.0 N G:LEU208 4.3 33.7 1.0 CG2 G:ILE200 4.4 35.9 1.0 CA G:LEU208 4.4 33.7 1.0 N G:THR209 4.5 34.7 1.0 CA G:GLY206 4.5 31.1 1.0 CE Q:MET45 4.6 35.2 1.0 N G:VAL205 4.6 30.5 1.0 CA G:THR209 4.6 34.7 1.0 N G:CYS203 4.6 32.1 1.0 O G:VAL199 4.6 36.0 1.0 CB G:LEU208 4.6 33.7 1.0 N G:GLY206 4.6 31.1 1.0 CA G:VAL205 4.9 30.5 1.0 C G:GLY206 4.9 31.1 1.0 CB G:ILE200 4.9 35.9 1.0 N G:ASP201 4.9 36.7 1.0

D.N.Grba, I.Chung, H.R.Bridges, A.A.Agip, J.Hirst. Investigation of Hydrated Channels and Proton Pathways in A High-Resolution Cryo-Em Structure of Mammalian Complex I. Sci Adv V. 9 I1359 2023.
ISSN: ESSN 2375-2548
PubMed: 37531432
DOI: 10.1126/SCIADV.ADI1359