Sodium in PDB 8ki0: Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin

The structure of Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin, PDB code: 8ki0 was solved by Y.Shisaka, H.Inaba, H.Sugimoto, O.Shoji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.68 / 1.45
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.561, 158.717, 33.534, 90, 97.58, 90
R / Rfree (%)	11.9 / 15.2

The structure of Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin (pdb code 8ki0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin, PDB code: 8ki0:

Sodium binding site 1 out of 1 in the Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Hemophore Hasa From Pseudomonas Protegens Pf- 5 Capturing Fe-Tetraphenylporphyrin within 5.0Å range: probe atom residue distance (Å) B Occ B:Na204 b:21.2 occ:1.00 O B:PRO34 2.0 10.2 1.0 O B:HOH434 2.3 37.2 1.0 O B:HOH317 2.9 33.6 1.0 C B:PRO34 3.0 9.7 1.0 CA B:GLY35 3.3 11.8 1.0 N B:GLY35 3.5 10.3 1.0 C B:GLY35 3.6 11.7 1.0 CG B:GLU36 4.0 19.2 1.0 N B:GLU36 4.0 11.4 1.0 O B:GLY35 4.0 13.6 1.0 CA B:PRO34 4.3 10.3 1.0 CB B:PRO34 4.7 10.4 1.0 CB B:GLU36 4.8 14.3 1.0 N B:PRO34 4.8 10.4 1.0 O B:ARG33 4.9 10.0 1.0 CA B:GLU36 4.9 12.8 1.0

H.Inaba, Y.Shisaka, S.Ariyasu, E.Sakakibara, G.Ueda, Y.Aiba, N.Shimizu, H.Sugimoto, O.Shoji. Heme-Substituted Protein Assembly Bridged By Synthetic Porphyrin: Achieving Controlled Configuration While Maintaining Rotational Freedom Rsc Adv V. 14 8829 2024.
ISSN: ESSN 2046-2069
DOI: 10.1039/D4RA01042F