Sodium in PDB 8i0b: The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102

The structure of The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102, PDB code: 8i0b was solved by X.Y.Qi, C.Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.49 / 1.73
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	121.4, 47.104, 98.413, 90, 90, 90
R / Rfree (%)	22.1 / 27.8

The structure of The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102 also contains other interesting chemical elements:

Fluorine	(F)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102 (pdb code 8i0b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102, PDB code: 8i0b:

Sodium binding site 1 out of 1 in the The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Human Glutamate Receptor 2 in Complex with Lt-102 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:52.1 occ:1.00 O A:HOH546 2.5 38.1 1.0 OD2 B:ASP248 2.9 29.0 1.0 HD11 A:ILE152 3.0 37.7 1.0 O B:HOH652 3.0 24.7 1.0 HB2 B:ASP248 3.4 28.1 1.0 HA2 B:GLY245 3.4 25.8 1.0 HD13 A:ILE152 3.5 37.7 1.0 CD1 A:ILE152 3.6 31.4 1.0 HD12 A:ILE152 3.6 37.7 1.0 O A:LEU215 3.7 20.2 1.0 HA3 B:GLY245 3.7 25.8 1.0 CG B:ASP248 3.7 25.9 1.0 HE2 A:PHE155 3.8 25.5 1.0 CB B:ASP248 3.9 23.4 1.0 HB3 B:ASP248 3.9 28.1 1.0 CA B:GLY245 4.1 21.4 1.0 HA A:ASP216 4.4 28.1 1.0 O B:HOH513 4.4 25.3 1.0 HZ A:PHE146 4.6 22.9 1.0 O B:GLY245 4.7 20.2 1.0 CE2 A:PHE155 4.7 21.2 1.0 HB3 A:ASP216 4.8 26.0 1.0 O B:HOH526 4.8 28.4 1.0 HE1 A:PHE146 4.8 23.4 1.0 OD1 B:ASP248 4.9 24.4 1.0 C A:LEU215 4.9 23.4 1.0 C B:GLY245 4.9 26.7 1.0

X.Y.Qi, C.Y.Wu. Structure of the Human GLUA2 Lbd in Complex with Lt-102 To Be Published.