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Sodium in PDB 8hkq: Ion Channel

Other elements in 8hkq:

The structure of Ion Channel also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Potassium (K) 11 atoms
Zinc (Zn) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Ion Channel (pdb code 8hkq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ion Channel, PDB code: 8hkq:

Sodium binding site 1 out of 1 in 8hkq

Go back to Sodium Binding Sites List in 8hkq
Sodium binding site 1 out of 1 in the Ion Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ion Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1303

b:68.5
occ:1.00
O A:TYR790 2.5 94.2 1.0
O A:LYS783 2.8 77.1 1.0
OH A:TYR796 2.9 80.3 1.0
O A:ARG780 3.1 61.8 1.0
C A:TYR790 3.6 92.3 1.0
CZ A:TYR796 3.8 75.9 1.0
C A:LYS783 3.8 78.5 1.0
CE1 A:TYR796 3.9 74.7 1.0
CA A:GLY784 4.1 103.6 1.0
O A:LEU781 4.1 64.2 1.0
N A:TYR790 4.2 96.5 1.0
CA A:TYR790 4.2 93.0 1.0
C A:ARG780 4.3 56.1 1.0
CB A:TYR790 4.3 91.5 1.0
N A:GLY784 4.4 101.2 1.0
C A:LEU781 4.4 62.6 1.0
O A:ASN788 4.5 119.8 1.0
CA A:LEU781 4.5 58.5 1.0
N A:GLU791 4.6 86.2 1.0
CB A:ASN788 4.6 121.0 1.0
C A:SER789 4.8 110.5 1.0
C A:ASN788 4.9 118.7 1.0
CA A:GLU791 4.9 87.3 1.0
C A:GLY784 4.9 104.9 1.0
N A:LEU781 4.9 58.9 1.0
N A:LYS783 5.0 81.5 1.0
N A:CYS785 5.0 117.0 1.0
CE2 A:TYR796 5.0 75.9 1.0

Reference:

J.Zhang, S.Liu, J.Fan, R.Yan, B.Huang, F.Zhou, T.Yuan, J.Gong, Z.Huang, D.Jiang. Structural Basis of Human SLO2.2 Channel Gating and Modulation. Cell Rep V. 42 12858 2023.
ISSN: ESSN 2211-1247
PubMed: 37494189
DOI: 10.1016/J.CELREP.2023.112858
Page generated: Wed Oct 9 12:15:46 2024

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