Sodium in PDB 8ft4: Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev

The structure of Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev, PDB code: 8ft4 was solved by A.Karasawa, H.Liu, M.Quick, A.H.Hendrickson, Q.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.79 / 4.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	87.11, 86.383, 80.73, 90, 95.53, 90
R / Rfree (%)	15.3 / 20.9

The structure of Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev (pdb code 8ft4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev, PDB code: 8ft4:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:36.9 occ:1.00 O A:GLY20 2.3 37.5 1.0 O A:ALA351 2.3 35.8 1.0 OG1 A:THR354 2.4 33.6 1.0 OG A:SER355 2.4 32.8 1.0 O A:VAL23 2.5 34.1 1.0 N A:SER355 2.6 36.3 1.0 CB A:SER355 3.0 33.5 1.0 C A:THR354 3.1 37.1 1.0 CA A:SER355 3.2 36.5 1.0 CB A:THR354 3.2 37.2 1.0 C A:VAL23 3.5 35.4 1.0 C A:GLY20 3.5 40.0 1.0 C A:ALA351 3.5 35.6 1.0 CA A:THR354 3.5 35.4 1.0 CA A:GLY24 3.7 38.8 1.0 O A:THR354 3.8 39.2 1.0 N A:THR354 3.9 33.1 1.0 N A:GLY24 4.0 39.2 1.0 CA A:GLY20 4.2 42.2 1.0 O A:PHE350 4.2 39.9 1.0 O A:ASN21 4.2 42.0 1.0 CA A:ALA351 4.2 35.0 1.0 C A:ASN21 4.5 41.4 1.0 N A:GLY352 4.5 36.6 1.0 N A:ASN21 4.6 40.0 1.0 C A:GLY352 4.6 36.0 1.0 CG2 A:THR354 4.6 40.2 1.0 O A:GLY352 4.6 37.7 1.0 CA A:VAL23 4.6 32.6 1.0 N A:VAL23 4.6 34.1 1.0 CA A:GLY352 4.7 38.9 1.0 C A:SER355 4.7 38.6 1.0 CA A:ASN21 4.8 39.6 1.0 C A:LEU353 4.9 32.6 1.0

Sodium binding site 2 out of 2 in the Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:38.6 occ:1.00 OD1 A:ASN27 2.3 38.3 1.0 OG1 A:THR254 2.4 39.6 1.0 OD1 A:ASN286 2.4 42.9 1.0 O A:THR254 2.4 44.7 1.0 O A:ALA22 2.4 40.1 1.0 O A:LEU604 2.7 44.1 1.0 CG A:ASN27 3.0 40.2 1.0 C A:THR254 3.1 44.4 1.0 CA A:THR254 3.1 45.4 1.0 CG A:ASN286 3.1 43.0 1.0 ND2 A:ASN286 3.2 43.2 1.0 CB A:THR254 3.3 42.1 1.0 ND2 A:ASN27 3.3 39.3 1.0 C A:ALA22 3.4 38.4 1.0 C A:LEU604 3.7 43.8 1.0 OE2 A:GLU290 3.8 46.6 1.0 N A:LEU604 3.9 42.8 1.0 CA A:VAL23 4.0 32.6 1.0 N A:GLY24 4.0 39.2 1.0 N A:VAL23 4.1 34.1 1.0 N A:ASN27 4.2 39.4 1.0 N A:LEU255 4.3 43.2 1.0 CB A:ASN27 4.3 42.4 1.0 CA A:ALA22 4.4 39.8 1.0 CA A:LEU604 4.4 41.9 1.0 CG2 A:THR254 4.5 45.1 1.0 N A:THR254 4.5 47.0 1.0 CD A:GLU290 4.5 50.1 1.0 C A:VAL23 4.5 35.4 1.0 OXT A:LEU604 4.6 44.8 1.0 CA A:ASN27 4.6 42.0 1.0 CB A:ASN286 4.6 40.5 1.0 CB A:ALA22 4.6 40.9 1.0 C A:GLY26 4.7 39.1 1.0 O A:PHE253 4.7 48.2 1.0 CG A:GLU290 4.7 44.5 1.0 CA A:GLY26 4.9 42.1 1.0

A.Karasawa, H.Liu, M.Quick, W.A.Hendrickson, Q.Liu. Crystallographic Characterization of Sodium Ions in A Bacterial Leucine/Sodium Symporter To Be Published.