Sodium in PDB 8e62: Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid

The structure of Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid, PDB code: 8e62 was solved by D.L.Hofmeister, N.J.Bockhaus, C.A.Seltzner, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.15 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	82.113, 79.768, 96.616, 90, 114.28, 90
R / Rfree (%)	16.6 / 20.8

The binding sites of Sodium atom in the Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid (pdb code 8e62). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid, PDB code: 8e62:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:20.4 occ:1.00 O A:HOH363 2.3 17.1 1.0 O C:HOH229 2.4 17.1 1.0 O B:HOH321 2.4 13.7 1.0 OD1 B:ASN28 2.5 17.0 1.0 OD1 C:ASN28 2.6 17.1 1.0 OD1 A:ASN28 3.2 20.1 1.0 CG C:ASN28 3.5 15.2 1.0 CG B:ASN28 3.5 17.2 1.0 CG A:ASN28 3.9 19.4 1.0 ND2 C:ASN28 3.9 21.3 1.0 ND2 B:ASN28 4.0 20.6 1.0 CB B:SER10 4.3 10.9 1.0 O B:SER10 4.3 12.1 1.0 ND2 A:ASN28 4.4 22.5 1.0 O B:HOH386 4.4 23.3 1.0 O C:SER10 4.4 12.2 1.0 CB C:SER10 4.5 13.5 1.0 O A:HOH410 4.5 26.6 1.0 CB C:ASN28 4.6 13.6 1.0 CB B:ASN28 4.7 14.3 1.0 O A:SER10 4.7 11.9 1.0 O C:HOH288 4.7 30.7 1.0 CB A:SER10 4.9 13.5 1.0 CB A:ASN28 4.9 14.8 1.0 CA B:SER10 4.9 11.6 1.0

Sodium binding site 2 out of 2 in the Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid within 5.0Å range: probe atom residue distance (Å) B Occ D:Na201 b:22.4 occ:1.00 O F:HOH350 2.3 18.6 1.0 O E:HOH338 2.4 22.2 1.0 O D:HOH328 2.4 16.2 1.0 OD1 D:ASN28 2.4 19.6 1.0 OD1 E:ASN28 2.6 20.0 1.0 OD1 F:ASN28 3.1 20.8 1.0 CG D:ASN28 3.5 17.4 1.0 CG E:ASN28 3.5 16.8 1.0 CG F:ASN28 3.9 18.7 1.0 ND2 D:ASN28 4.0 21.9 1.0 ND2 E:ASN28 4.0 20.8 1.0 CB D:SER10 4.2 11.5 1.0 O D:SER10 4.3 11.3 1.0 ND2 F:ASN28 4.3 19.5 1.0 O F:HOH403 4.4 27.0 1.0 O D:HOH396 4.5 28.1 1.0 O E:SER10 4.6 12.6 1.0 O E:HOH394 4.6 30.4 1.0 CB E:SER10 4.6 15.1 1.0 CB E:ASN28 4.6 13.4 1.0 O F:SER10 4.6 12.5 1.0 CB D:ASN28 4.7 14.2 1.0 CB F:SER10 4.8 14.2 1.0 CA D:SER10 4.9 12.7 1.0 CB F:ASN28 4.9 15.2 1.0

D.L.Hofmeister, C.A.Seltzner, N.J.Bockhaus, J.B.Thoden, H.M.Holden. Investigation of the Enzymes Required For the Biosynthesis of 2,3-Diacetamido-2,3-Dideoxy-D-Glucuronic Acid in Psychrobacter Cryohalolentis K5 T. Protein Sci. E4502 2022.
ISSN: ESSN 1469-896X
PubMed: 36346293
DOI: 10.1002/PRO.4502