Sodium in PDB 8de4: Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine

The structure of Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine (pdb code 8de4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine, PDB code: 8de4:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:58.0 occ:1.00 O A:SER373 2.5 65.9 1.0 O A:ALA133 2.7 54.8 1.0 ND2 A:ASN138 2.8 65.6 1.0 CA A:SER373 2.8 63.9 1.0 C A:SER373 2.9 59.4 1.0 CB A:SER373 3.1 62.9 1.0 ND2 A:ASN405 3.1 59.2 1.0 C A:ALA133 3.9 46.4 1.0 CG A:ASN138 3.9 60.6 1.0 N A:ASP135 4.0 52.6 1.0 CG A:ASN405 4.1 65.7 1.0 N A:SER373 4.2 67.0 1.0 OG A:SER373 4.2 63.2 1.0 N A:LEU374 4.2 53.5 1.0 CM A:B401004 4.2 53.5 1.0 CB A:ASP135 4.3 46.6 1.0 O A:PHE372 4.3 61.6 1.0 OD1 A:ASN405 4.3 69.9 1.0 CB A:ASN138 4.5 58.1 1.0 CA A:VAL134 4.7 47.4 1.0 C A:PHE372 4.7 64.4 1.0 N A:VAL134 4.7 39.6 1.0 CA A:ALA133 4.8 48.5 1.0 CA A:ASP135 4.8 46.0 1.0 CL A:CL1001 4.8 61.4 1.0 OD1 A:ASN138 4.8 58.1 1.0 OG A:SER409 4.9 65.6 1.0 C A:VAL134 4.9 50.6 1.0

Sodium binding site 2 out of 2 in the Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1003 b:28.2 occ:1.00 OD2 A:ASP474 2.6 45.8 1.0 CB A:ASP474 2.8 38.2 1.0 O A:LEU471 2.8 45.0 1.0 O A:VAL134 2.9 54.2 1.0 O A:GLY131 3.0 52.0 1.0 CG A:ASP474 3.1 38.6 1.0 CA A:LEU471 3.1 39.2 1.0 CG2 A:VAL134 3.2 47.0 1.0 C A:LEU471 3.3 38.1 1.0 O A:THR470 3.6 41.2 1.0 C A:GLY131 3.9 35.6 1.0 C A:VAL134 4.0 50.6 1.0 CA A:ASP474 4.0 29.7 1.0 CB A:LEU471 4.0 40.9 1.0 CG A:LEU471 4.1 43.6 1.0 N A:LEU471 4.1 37.8 1.0 CB A:VAL134 4.1 49.0 1.0 CA A:GLY131 4.2 34.2 1.0 N A:ASP474 4.2 43.2 1.0 C A:THR470 4.3 28.6 1.0 OD1 A:ASP474 4.3 24.8 1.0 CD1 A:LEU471 4.4 45.8 1.0 N A:SER475 4.4 42.7 1.0 CA A:VAL134 4.5 47.4 1.0 C A:ASP474 4.6 32.3 1.0 N A:GLY472 4.7 29.7 1.0 OG A:SER475 4.7 42.9 1.0 N A:VAL134 4.9 39.6 1.0

D.Yang, E.Gouaux. Native Serotonin Transporter in Complex with 15B8 Fab in the Presence of Methamphetamine To Be Published.