Sodium in PDB 8de3: Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine

The structure of Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine (pdb code 8de3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine, PDB code: 8de3:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:15.8 occ:1.00 OG A:SER373 2.4 12.9 1.0 O A:ALA133 2.4 8.1 1.0 ND2 A:ASN138 2.5 24.1 1.0 O A:SER373 2.6 20.2 1.0 OD1 A:ASN405 2.6 26.4 1.0 C A:SER373 3.1 15.4 1.0 CG A:ASN405 3.2 21.1 1.0 CA A:SER373 3.2 15.0 1.0 CB A:SER373 3.2 13.6 1.0 ND2 A:ASN405 3.2 21.8 1.0 C A:ALA133 3.4 6.3 1.0 CG A:ASN138 3.4 25.1 1.0 OD1 A:ASN138 3.8 25.2 1.0 CA A:ALA133 4.1 10.1 1.0 N A:LEU374 4.2 15.7 1.0 N A:VAL134 4.3 6.2 1.0 CA A:VAL134 4.4 5.5 1.0 CB A:ALA133 4.4 17.1 1.0 CB A:ASN138 4.4 20.6 1.0 CB A:ASN405 4.5 13.2 1.0 C14 A:COC1004 4.5 15.3 1.0 N A:SER373 4.6 18.0 1.0 OG A:SER409 4.8 19.7 1.0 CA A:LEU374 4.8 13.9 1.0 N A:ASP135 4.9 5.9 1.0 C A:VAL134 5.0 12.7 1.0

Sodium binding site 2 out of 2 in the Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1003 b:7.9 occ:1.00 O A:VAL134 2.4 23.2 1.0 O A:LEU471 2.5 10.2 1.0 O A:GLY131 2.5 9.0 1.0 CB A:ASP474 3.1 10.8 1.0 OG A:SER475 3.3 3.7 1.0 CG2 A:VAL134 3.4 6.9 1.0 C A:VAL134 3.4 12.7 1.0 C A:LEU471 3.4 8.1 1.0 N A:SER475 3.5 5.2 1.0 CA A:LEU471 3.7 4.9 1.0 C A:GLY131 3.7 4.9 1.0 OD2 A:ASP474 3.8 6.2 1.0 CG A:ASP474 3.9 9.8 1.0 CA A:ASP474 4.0 0.0 1.0 C A:ASP474 4.0 3.9 1.0 N A:ASP135 4.2 5.9 1.0 CB A:SER475 4.2 8.6 1.0 N A:ASP474 4.2 4.2 1.0 O A:THR470 4.2 16.7 1.0 CB A:VAL134 4.3 7.0 1.0 CA A:VAL134 4.3 5.5 1.0 CA A:ASP135 4.3 6.5 1.0 CA A:SER475 4.3 5.0 1.0 CA A:GLY131 4.4 5.4 1.0 CB A:LEU471 4.5 5.9 1.0 CG A:LEU471 4.6 12.0 1.0 N A:VAL134 4.6 6.2 1.0 N A:GLY472 4.7 7.2 1.0 N A:TYR132 4.7 4.6 1.0 N A:LEU471 4.8 7.0 1.0 O A:TYR132 4.9 8.8 1.0 CA A:TYR132 4.9 6.1 1.0 C A:THR470 5.0 7.0 1.0

D.Yang, E.Gouaux. Native Serotonin Transporter in Complex with 15B8 Fab Antibody in the Presence of Cocaine To Be Published.