Sodium in PDB 8ddt: Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2

The binding sites of Sodium atom in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2 (pdb code 8ddt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2, PDB code: 8ddt:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1404 b:30.7 occ:1.00 CA B:GLY1056 3.8 27.5 1.0 CA C:GLY1056 3.9 26.3 1.0 CA A:GLY1056 4.0 25.0 1.0 CA D:GLY1056 4.1 25.0 1.0 O B:GLY1056 4.6 27.5 1.0 O C:GLY1056 4.7 26.3 1.0 N B:GLY1056 4.7 27.5 1.0 C B:GLY1056 4.7 27.5 1.0 N C:GLY1056 4.8 26.3 1.0 C C:GLY1056 4.8 26.3 1.0 N A:GLY1056 4.9 25.0 1.0 N D:GLY1056 4.9 25.0 1.0 O A:TYR1055 4.9 24.6 1.0 O A:GLY1056 4.9 25.0 1.0 O B:TYR1055 5.0 24.6 1.0 O D:TYR1055 5.0 24.6 1.0

C.Zhao, R.Mackinnon. Structural and Functional Analyses of A Gpcr-Inhibited Ion Channel TRPM3. Neuron 2022.
ISSN: ISSN 0896-6273
PubMed: 36283409
DOI: 10.1016/J.NEURON.2022.10.002