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Sodium in PDB 8dds: Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1

Sodium Binding Sites:

The binding sites of Sodium atom in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1 (pdb code 8dds). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1, PDB code: 8dds:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 8dds

Go back to Sodium Binding Sites List in 8dds
Sodium binding site 1 out of 2 in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1404

b:51.4
occ:1.00
O D:GLY1056 3.3 40.0 1.0
O A:GLY1056 3.3 38.8 1.0
O C:GLY1056 3.5 38.8 1.0
O B:GLY1056 3.6 39.2 1.0
CE1 D:PHE1059 4.3 54.1 1.0
CE1 A:PHE1059 4.5 52.9 1.0
C D:GLY1056 4.5 40.0 1.0
C A:GLY1056 4.5 38.8 1.0
C C:GLY1056 4.6 38.8 1.0
C B:GLY1056 4.7 39.2 1.0
CZ D:PHE1059 4.8 54.1 1.0
CZ A:PHE1059 5.0 52.9 1.0

Sodium binding site 2 out of 2 in 8dds

Go back to Sodium Binding Sites List in 8dds
Sodium binding site 2 out of 2 in the Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2, STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1404

b:21.4
occ:1.00
CA B:GLY1056 4.2 39.2 1.0
CA C:GLY1056 4.2 38.8 1.0
CA D:GLY1056 4.5 40.0 1.0
CA A:GLY1056 4.6 38.8 1.0
N C:GLY1056 4.9 38.8 1.0
N B:GLY1056 4.9 39.2 1.0

Reference:

C.Zhao, R.Mackinnon. Structural and Functional Analyses of A Gpcr-Inhibited Ion Channel TRPM3. Neuron 2022.
ISSN: ISSN 0896-6273
PubMed: 36283409
DOI: 10.1016/J.NEURON.2022.10.002
Page generated: Wed Oct 9 11:28:33 2024

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