Atomistry » Sodium » PDB 8brn-8crl » 8cq6
Atomistry »
  Sodium »
    PDB 8brn-8crl »
      8cq6 »

Sodium in PDB 8cq6: Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari

Enzymatic activity of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari

All present enzymatic activity of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari:
5.4.99.5;

Protein crystallography data

The structure of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari, PDB code: 8cq6 was solved by T.Khatanbaatar, G.Cordara, U.Krengel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 99.90 / 2.44
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.108, 111.93, 221.386, 90, 90, 90
R / Rfree (%) 22.5 / 26.5

Other elements in 8cq6:

The structure of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari (pdb code 8cq6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari, PDB code: 8cq6:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in 8cq6

Go back to Sodium Binding Sites List in 8cq6
Sodium binding site 1 out of 4 in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:51.2
occ:1.00
 O A:HOH607 2.5 35.2 1.0
O A:LEU201 2.7 47.6 1.0
O A:GLN195 3.0 48.2 1.0
O A:PRO199 3.1 63.8 1.0
C A:PRO199 3.8 66.3 1.0
C A:LEU201 3.8 51.0 1.0
SG A:CYS202 3.9 63.0 1.0
C A:GLN195 3.9 49.5 1.0
CA A:PRO199 4.0 69.4 1.0
CB A:GLN195 4.1 55.0 1.0
CG A:GLN195 4.1 55.9 1.0
O A:HIS198 4.2 65.7 1.0
SG A:CYS123 4.2 73.0 1.0
CA A:GLN195 4.3 51.8 1.0
CA A:CYS202 4.5 48.8 1.0
N A:CYS202 4.6 48.0 1.0
N A:LEU201 4.7 61.3 1.0
CD A:GLN195 4.8 57.6 1.0
CB A:CYS202 4.8 52.8 1.0
OE1 A:GLN195 4.9 55.4 1.0
N A:GLU200 4.9 65.9 1.0
CA A:LEU201 4.9 55.5 1.0
N A:PRO199 5.0 69.5 1.0
C A:HIS198 5.0 62.5 1.0
N A:ARG196 5.0 50.6 1.0

Sodium binding site 2 out of 4 in 8cq6

Go back to Sodium Binding Sites List in 8cq6
Sodium binding site 2 out of 4 in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:64.9
occ:1.00
 O A:PRO159 2.3 59.7 1.0
O A:ALA161 2.9 50.0 1.0
C A:PRO159 3.5 63.3 1.0
C A:ALA161 4.1 56.3 1.0
CA A:PRO159 4.3 60.4 1.0
C A:HIS160 4.4 59.7 1.0
N A:HIS160 4.5 63.5 1.0
N A:ALA161 4.6 54.5 1.0
O A:HIS160 4.7 60.7 1.0
CA A:HIS160 4.7 65.5 1.0
CB A:LEU163 4.9 65.7 1.0
N A:LEU163 5.0 65.1 1.0
NE2 A:GLN162 5.0 73.2 1.0

Sodium binding site 3 out of 4 in 8cq6

Go back to Sodium Binding Sites List in 8cq6
Sodium binding site 3 out of 4 in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na501

b:46.4
occ:1.00
 O B:ALA46 2.4 49.4 1.0
C B:ALA46 3.3 46.1 1.0
CD B:GLN261 3.5 68.7 1.0
NE2 B:GLN261 3.5 74.6 1.0
OE1 B:GLN261 3.7 73.5 1.0
CG B:GLN261 4.0 56.4 1.0
CA B:ALA46 4.2 45.6 1.0
CA B:GLY47 4.2 46.0 1.0
N B:GLY47 4.2 44.5 1.0
O B:ARG45 4.3 43.6 1.0
OH B:TYR44 5.0 46.2 1.0

Sodium binding site 4 out of 4 in 8cq6

Go back to Sodium Binding Sites List in 8cq6
Sodium binding site 4 out of 4 in the Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Bifunctional Cyclohexadienyl Dehydratase/Chorismate Mutase From Duganella Sacchari within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na502

b:51.8
occ:1.00
 O B:PRO159 2.2 81.4 1.0
O B:ALA161 2.6 54.9 1.0
C B:PRO159 3.3 76.0 1.0
C B:ALA161 3.8 60.0 1.0
CA B:PRO159 4.0 72.7 1.0
N B:ALA161 4.3 66.1 1.0
N B:HIS160 4.3 72.4 1.0
C B:HIS160 4.3 71.8 1.0
CB B:LEU163 4.4 66.7 1.0
O B:ALA158 4.5 64.8 1.0
N B:LEU163 4.6 68.8 1.0
CA B:HIS160 4.6 74.9 1.0
CA B:ALA161 4.7 60.6 1.0
O B:HIS160 4.7 73.8 1.0
N B:GLN162 4.8 64.0 1.0
CA B:GLN162 4.9 69.9 1.0

Reference:

C.Stocker, T.Khatanbaatar, L.Bressan, K.Wurth-Roderer, G.Cordara, U.Krengel, P.Kast. Novel Exported Fusion Enzymes with Chorismate Mutase and Cyclohexadienyl Dehydratase Activity: Shikimate Pathway Enzymes Teamed Up in No Man'S Land. J.Biol.Chem. 05161 2023.
ISSN: ESSN 1083-351X
PubMed: 37586588
DOI: 10.1016/J.JBC.2023.105161
Page generated: Thu Dec 28 11:34:36 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy