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Sodium in PDB 8cih: Structure of Fl Cinp

Protein crystallography data

The structure of Structure of Fl Cinp, PDB code: 8cih was solved by M.Foglizzo, E.Zeqiraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.30 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 91.722, 91.722, 134.368, 90, 90, 120
R / Rfree (%) 21 / 23.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Fl Cinp (pdb code 8cih). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Fl Cinp, PDB code: 8cih:

Sodium binding site 1 out of 1 in 8cih

Go back to Sodium Binding Sites List in 8cih
Sodium binding site 1 out of 1 in the Structure of Fl Cinp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Fl Cinp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na301

b:46.1
occ:1.00
HD2 B:HIS199 2.0 44.2 1.0
O B:HOH407 2.6 33.0 1.0
OG B:SER202 2.8 42.5 1.0
HA B:HIS199 2.8 37.7 1.0
CD2 B:HIS199 2.9 36.7 1.0
O A:HOH331 3.0 39.3 1.0
HG B:SER202 3.1 51.1 1.0
HG22 B:VAL148 3.5 34.9 1.0
HB3 A:SER202 3.5 36.9 1.0
HB3 B:SER202 3.7 42.2 1.0
CB B:SER202 3.7 35.1 1.0
HG21 B:VAL148 3.7 34.9 1.0
CA B:HIS199 3.8 31.3 1.0
HB2 B:SER202 3.8 42.2 1.0
HG11 B:VAL148 3.8 35.4 1.0
CG B:HIS199 3.8 36.4 1.0
HB3 A:LEU198 3.9 38.1 1.0
HH2 B:TRP140 3.9 35.8 1.0
NE2 B:HIS199 3.9 40.8 1.0
HE2 B:HIS199 4.0 49.1 1.0
HZ2 B:TRP140 4.0 35.0 1.0
HG13 B:VAL148 4.1 35.4 1.0
CG2 B:VAL148 4.1 29.0 1.0
CB B:HIS199 4.2 32.9 1.0
HB3 B:HIS199 4.2 39.6 1.0
HE2 B:HIS144 4.2 40.2 1.0
CB A:SER202 4.3 30.6 1.0
O B:HIS199 4.3 31.2 1.0
HB2 A:SER202 4.4 36.9 1.0
CG1 B:VAL148 4.4 29.4 1.0
HA A:HIS199 4.4 33.0 1.0
O A:LEU198 4.4 27.9 1.0
ND1 A:HIS199 4.5 36.5 1.0
OG A:SER202 4.5 32.7 1.0
CH2 B:TRP140 4.5 29.7 1.0
HE1 A:HIS199 4.5 43.8 1.0
O B:LEU198 4.5 30.5 1.0
CZ2 B:TRP140 4.6 29.0 1.0
C B:HIS199 4.6 31.7 1.0
N B:HIS199 4.6 27.4 1.0
C A:LEU198 4.8 26.3 1.0
HG23 B:VAL148 4.8 34.9 1.0
CE1 A:HIS199 4.8 36.4 1.0
CB A:LEU198 4.8 31.7 1.0
HD13 A:LEU198 4.9 46.8 1.0
CB B:VAL148 4.9 28.9 1.0
C B:LEU198 4.9 29.0 1.0
H B:SER202 5.0 35.0 1.0
NE2 B:HIS144 5.0 33.4 1.0

Reference:

V.Krishnamoorthy, M.Foglizzo, R.L.Dilley, A.Wu, P.Dutta, L.J.Campbell, O.Degtjarik, L.J.Musgrove, A.N.Calabrese, E.Zeqiraj, R.A.Greenberg. The SPATA5-SPATA5L1 Atpase Complex Directs Replisome Proteostasis to Ensure Genome Integrity Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674
Page generated: Wed Oct 9 10:55:53 2024

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