Sodium in PDB 8baz: The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
Protein crystallography data
The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8baz
was solved by
J.Whittaker,
J.M.Martinez-Felices,
A.Guskov,
D.J.Slotboom,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.20 /
2.00
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.177,
100.593,
79.579,
90,
97.6,
90
|
|
R / Rfree (%)
|
18.1 /
24.3
|
Other elements in 8baz:
The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
(pdb code 8baz). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 6 binding sites of Sodium where determined in the
The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8baz:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
Sodium binding site 1 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 1 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na414
b:33.3
occ:1.00
|
H
|
A:VAL46
|
2.5
|
21.4
|
1.0
|
|
H
|
A:ASN17
|
2.6
|
23.7
|
1.0
|
|
HA
|
A:ASP45
|
2.6
|
25.5
|
1.0
|
|
OD1
|
A:ASP45
|
2.7
|
30.5
|
1.0
|
|
O
|
A:GLU10
|
2.9
|
25.2
|
1.0
|
|
HA3
|
A:GLY11
|
2.9
|
24.3
|
1.0
|
|
H
|
A:ALA18
|
3.0
|
22.6
|
1.0
|
|
O
|
A:ASN12
|
3.1
|
26.6
|
1.0
|
|
H
|
A:SER16
|
3.2
|
25.7
|
1.0
|
|
N
|
A:ASN17
|
3.2
|
23.4
|
1.0
|
|
N
|
A:ALA18
|
3.3
|
21.8
|
1.0
|
|
HB2
|
A:ALA18
|
3.3
|
23.6
|
1.0
|
|
N
|
A:VAL46
|
3.3
|
20.4
|
1.0
|
|
HA
|
A:SER16
|
3.3
|
25.1
|
1.0
|
|
OD1
|
A:ASN17
|
3.4
|
28.9
|
1.0
|
|
H
|
A:ASN12
|
3.5
|
25.2
|
1.0
|
|
CA
|
A:ASP45
|
3.5
|
26.3
|
1.0
|
|
N
|
A:ASN12
|
3.6
|
25.6
|
1.0
|
|
CG
|
A:ASP45
|
3.6
|
27.4
|
1.0
|
|
N
|
A:SER16
|
3.6
|
25.9
|
1.0
|
|
CA
|
A:GLY11
|
3.6
|
24.6
|
1.0
|
|
C
|
A:GLY11
|
3.7
|
23.9
|
1.0
|
|
C
|
A:ASN12
|
3.8
|
26.0
|
1.0
|
|
CA
|
A:SER16
|
3.8
|
24.9
|
1.0
|
|
C
|
A:ASN17
|
3.8
|
24.1
|
1.0
|
|
C
|
A:ASP45
|
3.9
|
23.9
|
1.0
|
|
C
|
A:GLU10
|
3.9
|
22.4
|
1.0
|
|
O
|
A:GLY44
|
3.9
|
22.7
|
1.0
|
|
HG23
|
A:VAL46
|
3.9
|
23.3
|
1.0
|
|
C
|
A:SER16
|
4.0
|
22.6
|
1.0
|
|
CA
|
A:ALA18
|
4.0
|
22.6
|
1.0
|
|
CB
|
A:ALA18
|
4.0
|
23.5
|
1.0
|
|
H
|
A:TYR15
|
4.0
|
24.9
|
1.0
|
|
HA
|
A:ALA18
|
4.0
|
22.7
|
1.0
|
|
HA
|
A:VAL46
|
4.1
|
22.2
|
1.0
|
|
CA
|
A:ASN17
|
4.1
|
25.8
|
1.0
|
|
CB
|
A:ASP45
|
4.1
|
25.4
|
1.0
|
|
HA
|
A:PHE13
|
4.2
|
22.4
|
1.0
|
|
N
|
A:GLY11
|
4.2
|
23.7
|
1.0
|
|
CA
|
A:VAL46
|
4.3
|
22.5
|
1.0
|
|
O
|
A:GLY11
|
4.3
|
23.3
|
1.0
|
|
HG22
|
A:VAL46
|
4.3
|
23.2
|
1.0
|
|
HB3
|
A:ALA18
|
4.3
|
23.4
|
1.0
|
|
CA
|
A:ASN12
|
4.4
|
24.6
|
1.0
|
|
HA2
|
A:GLY11
|
4.4
|
24.2
|
1.0
|
|
CG
|
A:ASN17
|
4.4
|
28.5
|
1.0
|
|
OD2
|
A:ASP45
|
4.5
|
30.4
|
1.0
|
|
HB2
|
A:TYR15
|
4.5
|
29.4
|
1.0
|
|
HB2
|
A:ASP45
|
4.5
|
25.9
|
1.0
|
|
N
|
A:ASP45
|
4.5
|
25.4
|
1.0
|
|
N
|
A:PHE13
|
4.5
|
23.4
|
1.0
|
|
CG2
|
A:VAL46
|
4.5
|
23.4
|
1.0
|
|
C
|
A:TYR15
|
4.5
|
25.2
|
1.0
|
|
C
|
A:GLY44
|
4.6
|
23.1
|
1.0
|
|
O
|
A:ASN17
|
4.7
|
28.6
|
1.0
|
|
N
|
A:TYR15
|
4.8
|
24.7
|
1.0
|
|
H
|
A:GLN14
|
4.8
|
24.4
|
1.0
|
|
HB1
|
A:ALA18
|
4.8
|
23.1
|
1.0
|
|
CA
|
A:PHE13
|
4.8
|
22.0
|
1.0
|
|
CB
|
A:ASN17
|
4.9
|
27.0
|
1.0
|
|
H
|
A:ALA47
|
4.9
|
24.4
|
1.0
|
|
HA
|
A:ASN17
|
4.9
|
25.3
|
1.0
|
|
HB3
|
A:ASP45
|
4.9
|
25.9
|
1.0
|
|
Sodium binding site 2 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 2 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na415
b:38.9
occ:1.00
|
OG
|
A:SER86
|
2.7
|
23.5
|
1.0
|
|
OD1
|
A:ASN63
|
2.8
|
25.0
|
1.0
|
|
HB2
|
A:SER86
|
3.1
|
22.2
|
1.0
|
|
O34
|
A:CBY401
|
3.3
|
30.7
|
1.0
|
|
HA
|
A:ASN63
|
3.4
|
22.4
|
1.0
|
|
HD1
|
A:TRP104
|
3.4
|
23.7
|
1.0
|
|
CB
|
A:SER86
|
3.5
|
22.0
|
1.0
|
|
CG
|
A:ASN63
|
3.7
|
24.1
|
1.0
|
|
HB2
|
A:ASN63
|
3.9
|
23.4
|
1.0
|
|
HN3A
|
A:CBY401
|
4.0
|
24.8
|
1.0
|
|
HE1
|
A:HIS65
|
4.0
|
30.8
|
1.0
|
|
HA
|
A:SER86
|
4.1
|
21.6
|
1.0
|
|
HE1
|
A:PHE13
|
4.1
|
26.2
|
1.0
|
|
HD22
|
A:ASN62
|
4.1
|
18.6
|
1.0
|
|
CB
|
A:ASN63
|
4.2
|
23.6
|
1.0
|
|
HB3
|
A:SER86
|
4.2
|
22.2
|
1.0
|
|
O
|
A:ASN62
|
4.2
|
23.4
|
1.0
|
|
CA
|
A:ASN63
|
4.2
|
22.2
|
1.0
|
|
CD1
|
A:TRP104
|
4.2
|
23.8
|
1.0
|
|
O
|
A:THR85
|
4.2
|
24.7
|
1.0
|
|
HE1
|
A:TRP104
|
4.3
|
24.0
|
1.0
|
|
C32
|
A:CBY401
|
4.3
|
25.8
|
1.0
|
|
CA
|
A:SER86
|
4.4
|
21.5
|
1.0
|
|
CE1
|
A:HIS65
|
4.5
|
31.4
|
1.0
|
|
N33
|
A:CBY401
|
4.5
|
24.4
|
1.0
|
|
ND2
|
A:ASN62
|
4.6
|
18.4
|
1.0
|
|
HG21
|
A:ILE103
|
4.6
|
22.7
|
1.0
|
|
NE1
|
A:TRP104
|
4.6
|
23.8
|
1.0
|
|
HZ
|
A:PHE13
|
4.7
|
27.8
|
1.0
|
|
ND2
|
A:ASN63
|
4.9
|
24.4
|
1.0
|
|
CE1
|
A:PHE13
|
4.9
|
26.5
|
1.0
|
|
C
|
A:ASN62
|
4.9
|
20.6
|
1.0
|
|
NE2
|
A:HIS65
|
4.9
|
29.2
|
1.0
|
|
HD21
|
A:ASN62
|
4.9
|
18.5
|
1.0
|
|
OD1
|
A:ASN62
|
5.0
|
23.8
|
1.0
|
|
N
|
A:ASN63
|
5.0
|
20.7
|
1.0
|
|
Sodium binding site 3 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 3 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na416
b:31.6
occ:1.00
|
OE1
|
A:GLU135
|
2.5
|
28.6
|
1.0
|
|
OG
|
A:SER133
|
2.6
|
23.6
|
1.0
|
|
O
|
A:THR134
|
2.8
|
21.9
|
1.0
|
|
HG3
|
A:ARG88
|
2.8
|
19.8
|
1.0
|
|
HB
|
A:ILE103
|
2.8
|
22.7
|
1.0
|
|
HE3
|
A:TRP149
|
3.2
|
23.3
|
1.0
|
|
H
|
A:THR134
|
3.3
|
24.7
|
1.0
|
|
HA
|
A:SER133
|
3.3
|
26.1
|
1.0
|
|
HE
|
A:ARG88
|
3.4
|
21.7
|
1.0
|
|
HB2
|
A:GLU135
|
3.4
|
23.0
|
1.0
|
|
O
|
A:GLN102
|
3.4
|
24.6
|
1.0
|
|
HA
|
A:ILE103
|
3.5
|
22.6
|
1.0
|
|
C
|
A:THR134
|
3.5
|
22.7
|
1.0
|
|
N
|
A:THR134
|
3.6
|
24.6
|
1.0
|
|
CB
|
A:SER133
|
3.6
|
25.2
|
1.0
|
|
HD3
|
A:ARG88
|
3.6
|
20.2
|
1.0
|
|
CB
|
A:ILE103
|
3.6
|
22.4
|
1.0
|
|
HD12
|
A:ILE103
|
3.6
|
24.8
|
1.0
|
|
CG
|
A:ARG88
|
3.6
|
19.7
|
1.0
|
|
HG13
|
A:ILE103
|
3.6
|
23.8
|
1.0
|
|
NE
|
A:ARG88
|
3.7
|
21.8
|
1.0
|
|
HB2
|
A:SER133
|
3.7
|
25.0
|
1.0
|
|
HB3
|
A:TRP149
|
3.7
|
21.6
|
1.0
|
|
CD
|
A:GLU135
|
3.7
|
27.7
|
1.0
|
|
CA
|
A:SER133
|
3.8
|
26.0
|
1.0
|
|
CD
|
A:ARG88
|
3.8
|
20.2
|
1.0
|
|
HA
|
A:GLU135
|
3.8
|
21.4
|
1.0
|
|
CA
|
A:ILE103
|
3.9
|
22.6
|
1.0
|
|
C
|
A:GLN102
|
3.9
|
21.6
|
1.0
|
|
C
|
A:SER133
|
4.0
|
26.9
|
1.0
|
|
N
|
A:ILE103
|
4.0
|
20.9
|
1.0
|
|
CG1
|
A:ILE103
|
4.0
|
24.0
|
1.0
|
|
H
|
A:SER150
|
4.0
|
23.2
|
1.0
|
|
HG2
|
A:ARG88
|
4.1
|
19.9
|
1.0
|
|
CB
|
A:GLU135
|
4.1
|
23.2
|
1.0
|
|
CE3
|
A:TRP149
|
4.2
|
23.1
|
1.0
|
|
CA
|
A:THR134
|
4.2
|
23.8
|
1.0
|
|
H
|
A:TRP149
|
4.2
|
22.5
|
1.0
|
|
N
|
A:GLU135
|
4.3
|
20.4
|
1.0
|
|
CD1
|
A:ILE103
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:GLU135
|
4.3
|
21.3
|
1.0
|
|
HB3
|
A:SER133
|
4.4
|
25.0
|
1.0
|
|
CZ
|
A:ARG88
|
4.5
|
23.6
|
1.0
|
|
CG
|
A:GLU135
|
4.5
|
25.6
|
1.0
|
|
HB3
|
A:SER150
|
4.5
|
23.0
|
1.0
|
|
HB3
|
A:ARG88
|
4.5
|
20.1
|
1.0
|
|
H
|
A:ILE103
|
4.6
|
21.1
|
1.0
|
|
OE2
|
A:GLU135
|
4.6
|
28.3
|
1.0
|
|
CB
|
A:ARG88
|
4.6
|
20.0
|
1.0
|
|
HA
|
A:THR134
|
4.6
|
23.9
|
1.0
|
|
HZ3
|
A:TRP149
|
4.7
|
24.1
|
1.0
|
|
CB
|
A:TRP149
|
4.7
|
21.6
|
1.0
|
|
H
|
A:GLN102
|
4.7
|
22.2
|
1.0
|
|
HD2
|
A:ARG88
|
4.8
|
20.4
|
1.0
|
|
HB2
|
A:ARG88
|
4.8
|
20.3
|
1.0
|
|
CG2
|
A:ILE103
|
4.8
|
22.7
|
1.0
|
|
HD13
|
A:ILE103
|
4.8
|
24.7
|
1.0
|
|
NH2
|
A:ARG88
|
4.9
|
23.4
|
1.0
|
|
CZ3
|
A:TRP149
|
4.9
|
24.4
|
1.0
|
|
HG22
|
A:ILE103
|
4.9
|
22.5
|
1.0
|
|
HG12
|
A:ILE103
|
4.9
|
23.9
|
1.0
|
|
HB2
|
A:SER150
|
4.9
|
23.1
|
1.0
|
|
HH22
|
A:ARG88
|
4.9
|
23.5
|
1.0
|
|
N
|
A:SER150
|
4.9
|
23.2
|
1.0
|
|
HB3
|
A:GLU135
|
5.0
|
23.2
|
1.0
|
|
O
|
A:SER133
|
5.0
|
23.4
|
1.0
|
|
HD11
|
A:ILE103
|
5.0
|
24.8
|
1.0
|
|
Sodium binding site 4 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 4 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na417
b:27.5
occ:1.00
|
O
|
A:GLY193
|
2.6
|
30.3
|
1.0
|
|
O
|
A:ASP191
|
2.7
|
24.6
|
1.0
|
|
O
|
A:HOH570
|
2.7
|
48.2
|
1.0
|
|
O
|
A:ASP226
|
2.8
|
32.6
|
1.0
|
|
O
|
A:HOH515
|
2.8
|
30.9
|
1.0
|
|
HD1
|
A:TRP227
|
2.8
|
40.5
|
1.0
|
|
HE1
|
A:TYR201
|
3.0
|
32.7
|
1.0
|
|
HA
|
A:TRP227
|
3.4
|
33.1
|
1.0
|
|
HA3
|
A:GLY192
|
3.5
|
26.4
|
1.0
|
|
CD1
|
A:TRP227
|
3.6
|
41.0
|
1.0
|
|
C
|
A:GLY192
|
3.7
|
26.5
|
1.0
|
|
C
|
A:GLY193
|
3.7
|
27.7
|
1.0
|
|
C
|
A:ASP226
|
3.8
|
33.1
|
1.0
|
|
HB2
|
A:TRP227
|
3.8
|
35.7
|
1.0
|
|
O
|
A:GLY192
|
3.8
|
26.6
|
1.0
|
|
C
|
A:ASP191
|
3.8
|
24.6
|
1.0
|
|
HD1
|
A:TYR201
|
3.8
|
31.2
|
1.0
|
|
CE1
|
A:TYR201
|
3.9
|
32.7
|
1.0
|
|
CA
|
A:GLY192
|
4.0
|
26.9
|
1.0
|
|
HA
|
A:TYR194
|
4.0
|
28.8
|
1.0
|
|
N
|
A:GLY193
|
4.1
|
27.1
|
1.0
|
|
CA
|
A:TRP227
|
4.1
|
32.7
|
1.0
|
|
CB
|
A:TRP227
|
4.2
|
35.7
|
1.0
|
|
CG
|
A:TRP227
|
4.2
|
41.2
|
1.0
|
|
CD1
|
A:TYR201
|
4.3
|
31.1
|
1.0
|
|
N
|
A:TRP227
|
4.3
|
33.4
|
1.0
|
|
H
|
A:GLY225
|
4.3
|
32.6
|
1.0
|
|
N
|
A:GLY192
|
4.4
|
24.9
|
1.0
|
|
H
|
A:GLY193
|
4.4
|
27.3
|
1.0
|
|
CA
|
A:GLY193
|
4.5
|
29.3
|
1.0
|
|
C
|
A:GLY225
|
4.5
|
31.8
|
1.0
|
|
O
|
A:GLY225
|
4.5
|
36.6
|
1.0
|
|
HA2
|
A:GLY225
|
4.6
|
32.9
|
1.0
|
|
O
|
A:GLU202
|
4.6
|
30.1
|
1.0
|
|
HD3
|
A:PRO204
|
4.7
|
26.9
|
1.0
|
|
N
|
A:TYR194
|
4.7
|
27.5
|
1.0
|
|
HG3
|
A:PRO204
|
4.7
|
28.0
|
1.0
|
|
NE1
|
A:TRP227
|
4.7
|
41.8
|
1.0
|
|
HB2
|
A:ASP191
|
4.7
|
26.1
|
1.0
|
|
N
|
A:ASP226
|
4.8
|
30.8
|
1.0
|
|
CA
|
A:TYR194
|
4.8
|
29.1
|
1.0
|
|
HD3
|
A:PRO228
|
4.8
|
28.4
|
1.0
|
|
CA
|
A:GLY225
|
4.9
|
33.5
|
1.0
|
|
HE1
|
A:TRP227
|
4.9
|
40.8
|
1.0
|
|
HA2
|
A:GLY192
|
4.9
|
26.4
|
1.0
|
|
CA
|
A:ASP226
|
4.9
|
31.8
|
1.0
|
|
N
|
A:GLY225
|
4.9
|
32.5
|
1.0
|
|
Sodium binding site 5 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 5 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na418
b:46.9
occ:1.00
|
HE22
|
A:GLN152
|
2.5
|
29.3
|
1.0
|
|
H
|
A:ASP128
|
2.6
|
29.7
|
1.0
|
|
OG
|
A:SER131
|
2.6
|
29.2
|
1.0
|
|
HA
|
A:MET127
|
2.8
|
28.0
|
1.0
|
|
NE2
|
A:GLN152
|
3.0
|
29.6
|
1.0
|
|
HE21
|
A:GLN152
|
3.2
|
29.2
|
1.0
|
|
OD1
|
A:ASP128
|
3.2
|
29.2
|
1.0
|
|
HG3
|
A:MET127
|
3.2
|
30.2
|
1.0
|
|
N
|
A:ASP128
|
3.4
|
30.0
|
1.0
|
|
O
|
A:HOH522
|
3.5
|
36.9
|
1.0
|
|
HA2
|
A:GLY132
|
3.7
|
23.3
|
1.0
|
|
CA
|
A:MET127
|
3.7
|
27.4
|
1.0
|
|
CG
|
A:ASP128
|
3.7
|
32.2
|
1.0
|
|
C
|
A:SER131
|
3.8
|
25.2
|
1.0
|
|
O
|
A:SER131
|
3.8
|
27.1
|
1.0
|
|
HG2
|
A:MET127
|
3.9
|
30.2
|
1.0
|
|
H
|
A:SER131
|
3.9
|
27.4
|
1.0
|
|
CB
|
A:SER131
|
3.9
|
27.3
|
1.0
|
|
CG
|
A:MET127
|
3.9
|
30.1
|
1.0
|
|
N
|
A:GLY132
|
4.0
|
24.0
|
1.0
|
|
C
|
A:MET127
|
4.0
|
27.4
|
1.0
|
|
CD
|
A:GLN152
|
4.1
|
27.2
|
1.0
|
|
CA
|
A:SER131
|
4.2
|
27.5
|
1.0
|
|
OD2
|
A:ASP128
|
4.2
|
37.0
|
1.0
|
|
O
|
A:ASP128
|
4.2
|
26.4
|
1.0
|
|
HB2
|
A:SER131
|
4.3
|
27.6
|
1.0
|
|
CB
|
A:MET127
|
4.3
|
29.3
|
1.0
|
|
CA
|
A:ASP128
|
4.3
|
31.5
|
1.0
|
|
CA
|
A:GLY132
|
4.4
|
23.2
|
1.0
|
|
OE1
|
A:GLN152
|
4.4
|
28.5
|
1.0
|
|
O
|
A:ASP126
|
4.4
|
26.9
|
1.0
|
|
N
|
A:SER131
|
4.4
|
26.6
|
1.0
|
|
H
|
A:GLY132
|
4.5
|
24.0
|
1.0
|
|
CB
|
A:ASP128
|
4.5
|
30.8
|
1.0
|
|
HB3
|
A:SER131
|
4.6
|
27.9
|
1.0
|
|
HB3
|
A:ASP128
|
4.6
|
31.2
|
1.0
|
|
C
|
A:ASP128
|
4.7
|
30.6
|
1.0
|
|
HB2
|
A:MET127
|
4.7
|
29.1
|
1.0
|
|
N
|
A:MET127
|
4.8
|
28.5
|
1.0
|
|
HA3
|
A:GLY132
|
4.8
|
23.5
|
1.0
|
|
Sodium binding site 6 out
of 6 in 8baz
Go back to
Sodium Binding Sites List in 8baz
Sodium binding site 6 out
of 6 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na416
b:27.0
occ:1.00
|
O
|
B:GLY193
|
2.6
|
33.2
|
1.0
|
|
O
|
B:ASP191
|
2.7
|
25.9
|
1.0
|
|
O
|
B:HOH590
|
2.7
|
46.1
|
1.0
|
|
O
|
B:ASP226
|
2.7
|
30.0
|
1.0
|
|
HD1
|
B:TRP227
|
2.8
|
38.9
|
1.0
|
|
O
|
B:HOH542
|
2.8
|
35.6
|
1.0
|
|
HE1
|
B:TYR201
|
3.2
|
32.5
|
1.0
|
|
HA
|
B:TRP227
|
3.3
|
32.4
|
1.0
|
|
CD1
|
B:TRP227
|
3.5
|
38.8
|
1.0
|
|
HA3
|
B:GLY192
|
3.6
|
28.4
|
1.0
|
|
HB2
|
B:TRP227
|
3.7
|
34.8
|
1.0
|
|
C
|
B:GLY193
|
3.7
|
30.2
|
1.0
|
|
C
|
B:ASP226
|
3.7
|
32.4
|
1.0
|
|
C
|
B:GLY192
|
3.7
|
29.0
|
1.0
|
|
O
|
B:GLY192
|
3.8
|
30.4
|
1.0
|
|
C
|
B:ASP191
|
3.8
|
25.6
|
1.0
|
|
HD1
|
B:TYR201
|
3.9
|
31.3
|
1.0
|
|
HA
|
B:TYR194
|
4.0
|
30.7
|
1.0
|
|
CA
|
B:TRP227
|
4.0
|
32.4
|
1.0
|
|
CA
|
B:GLY192
|
4.0
|
29.2
|
1.0
|
|
CE1
|
B:TYR201
|
4.0
|
32.8
|
1.0
|
|
N
|
B:GLY193
|
4.1
|
28.9
|
1.0
|
|
CB
|
B:TRP227
|
4.1
|
34.5
|
1.0
|
|
CG
|
B:TRP227
|
4.1
|
39.3
|
1.0
|
|
N
|
B:TRP227
|
4.2
|
31.2
|
1.0
|
|
N
|
B:GLY192
|
4.4
|
25.9
|
1.0
|
|
CD1
|
B:TYR201
|
4.4
|
30.5
|
1.0
|
|
H
|
B:GLY225
|
4.4
|
34.7
|
1.0
|
|
O
|
B:GLY225
|
4.4
|
32.1
|
1.0
|
|
H
|
B:GLY193
|
4.4
|
29.1
|
1.0
|
|
C
|
B:GLY225
|
4.5
|
31.5
|
1.0
|
|
CA
|
B:GLY193
|
4.5
|
31.2
|
1.0
|
|
HA2
|
B:GLY225
|
4.5
|
33.9
|
1.0
|
|
NE1
|
B:TRP227
|
4.6
|
41.9
|
1.0
|
|
N
|
B:TYR194
|
4.6
|
31.1
|
1.0
|
|
HB2
|
B:ASP191
|
4.7
|
27.6
|
1.0
|
|
O
|
B:GLU202
|
4.7
|
24.1
|
1.0
|
|
HD3
|
B:PRO204
|
4.7
|
26.4
|
1.0
|
|
CA
|
B:TYR194
|
4.7
|
30.5
|
1.0
|
|
HG3
|
B:PRO204
|
4.7
|
27.3
|
1.0
|
|
N
|
B:ASP226
|
4.8
|
31.3
|
1.0
|
|
HD3
|
B:PRO228
|
4.8
|
30.6
|
1.0
|
|
HE1
|
B:TRP227
|
4.8
|
41.4
|
1.0
|
|
CA
|
B:GLY225
|
4.9
|
34.2
|
1.0
|
|
CA
|
B:ASP226
|
4.9
|
32.6
|
1.0
|
|
HA2
|
B:GLY192
|
4.9
|
28.5
|
1.0
|
|
CA
|
B:ASP191
|
5.0
|
25.6
|
1.0
|
|
N
|
B:GLY225
|
5.0
|
35.1
|
1.0
|
|
Reference:
J.Whittaker,
A.Guskov.
The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobinamide. To Be Published.
Page generated: Wed Oct 9 10:39:36 2024
|
