Sodium in PDB 8bai: The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8bai was solved by J.Whittaker, J.M.Martinez Felices, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.63 / 1.69
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	49.24, 79.936, 101.047, 89.97, 89.89, 82.28
R / Rfree (%)	15.7 / 18

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. also contains other interesting chemical elements:

Cobalt

(Co)

4 atoms

The binding sites of Sodium atom in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. (pdb code 8bai). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8bai:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na407 b:31.3 occ:1.00 OD1 D:ASN63 2.6 17.2 1.0 OG D:SER86 2.7 12.5 1.0 O D:HOH682 2.9 43.4 1.0 N33 D:CNC406 3.0 13.8 1.0 CB D:SER86 3.4 13.4 1.0 CG D:ASN63 3.7 18.1 1.0 O D:HOH503 3.9 26.8 1.0 O D:ASN62 3.9 13.7 1.0 CA D:ASN63 4.1 14.8 1.0 C32 D:CNC406 4.1 12.5 1.0 CB D:ASN63 4.2 15.7 1.0 O D:THR85 4.2 15.9 1.0 CD1 D:TRP104 4.2 12.7 1.0 CA D:SER86 4.3 11.6 1.0 O34 D:CNC406 4.4 13.6 1.0 OD1 D:ASN62 4.5 13.6 1.0 NE1 D:TRP104 4.6 12.9 1.0 C D:ASN62 4.7 14.6 1.0 ND2 D:ASN63 4.8 18.1 1.0 N D:ASN63 4.8 14.4 1.0 CE1 D:HIS65 4.9 30.5 1.0 CG D:ASN62 4.9 11.9 1.0 ND2 D:ASN62 4.9 10.8 1.0

Sodium binding site 2 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na408 b:23.5 occ:1.00 OE2 D:GLU10 2.7 15.2 1.0 O D:HOH570 2.7 9.8 1.0 O D:GLN48 2.7 11.9 1.0 O D:HOH550 2.8 16.8 1.0 C D:GLY316 3.4 14.8 1.0 O D:HOH513 3.4 25.3 1.0 O D:GLY316 3.4 14.1 1.0 CA D:GLY316 3.5 14.8 1.0 C D:GLN48 3.6 11.2 1.0 NE2 D:GLN48 3.6 17.0 1.0 CD D:GLU10 3.7 15.0 1.0 CB D:ALA317 3.7 13.6 1.0 N D:ALA317 3.8 12.3 1.0 CA D:GLN48 3.8 12.0 1.0 CG D:GLU10 3.8 13.8 1.0 CD D:GLN48 3.9 15.4 1.0 OE1 D:GLN48 4.1 16.7 1.0 O D:ALA47 4.2 13.5 1.0 CA D:ALA317 4.3 12.2 1.0 N D:GLY316 4.4 14.2 1.0 CG D:GLN48 4.6 14.1 1.0 O D:HOH566 4.6 30.8 1.0 OG1 D:THR8 4.6 14.3 1.0 N D:SER49 4.8 10.4 1.0 CB D:GLN48 4.8 12.9 1.0 N D:GLN48 4.8 11.2 1.0 OE1 D:GLU10 4.9 14.2 1.0 C D:ALA47 4.9 13.9 1.0 OH D:TYR89 5.0 14.3 1.0

J.Whittaker, A.Guskov. The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. To Be Published.