Sodium in PDB 8ate: Galacturonic Acid Oxidase From Citrus Sinensis

The structure of Galacturonic Acid Oxidase From Citrus Sinensis, PDB code: 8ate was solved by A.Boverio, S.Savino, M.W.Fraaije, N.Loncar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.03 / 1.92
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.653, 101.653, 108.746, 90, 90, 120
R / Rfree (%)	20.5 / 24.4

The structure of Galacturonic Acid Oxidase From Citrus Sinensis also contains other interesting chemical elements:

Iodine	(I)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Galacturonic Acid Oxidase From Citrus Sinensis (pdb code 8ate). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Galacturonic Acid Oxidase From Citrus Sinensis, PDB code: 8ate:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Galacturonic Acid Oxidase From Citrus Sinensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Galacturonic Acid Oxidase From Citrus Sinensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na606 b:35.4 occ:1.00 OG A:SER303 3.0 66.3 1.0 CD A:PRO259 4.1 44.3 1.0 CB A:SER303 4.1 54.3 1.0 O A:GLN257 4.2 44.2 1.0 CG2 A:ILE299 4.3 49.6 1.0 CG A:PRO259 4.4 50.5 1.0 O A:ILE299 4.7 54.0 1.0 CG1 A:ILE299 4.8 49.9 1.0 CA A:ILE299 4.8 50.4 1.0 CB A:ILE299 4.8 48.0 1.0 OE2 A:GLU302 4.9 80.4 1.0

Sodium binding site 2 out of 2 in the Galacturonic Acid Oxidase From Citrus Sinensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Galacturonic Acid Oxidase From Citrus Sinensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na607 b:44.9 occ:1.00 OG A:SER36 3.3 78.2 1.0 CD A:LYS55 3.9 67.3 1.0 CE A:LYS55 3.9 77.0 1.0 CD2 A:LEU39 4.1 64.7 1.0 CD2 A:PHE35 4.2 63.8 1.0 CG A:LYS55 4.2 65.4 1.0 CE2 A:PHE35 4.2 69.8 1.0 CB A:SER36 4.3 66.4 1.0 CA A:SER36 4.3 65.7 1.0 CB A:LYS55 4.7 59.3 1.0 N A:SER36 4.9 65.0 1.0

A.Boverio, S.Savino, M.W.Fraaije, N.Loncar. Glucuronic Acid Oxidase From Citrus Sinensis To Be Published.