Sodium in PDB 8acy: X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution

Enzymatic activity of X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution

All present enzymatic activity of X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution:
7.2.1.1;

Protein crystallography data

The structure of X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution, PDB code: 8acy was solved by G.Fritz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.73 / 3.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 95.27, 143.32, 104.37, 90, 110.98, 90
R / Rfree (%) 26.6 / 29

Other elements in 8acy:

The structure of X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution (pdb code 8acy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution, PDB code: 8acy:

Sodium binding site 1 out of 1 in 8acy

Go back to Sodium Binding Sites List in 8acy
Sodium binding site 1 out of 1 in the X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na505

b:138.2
occ:1.00
 O B:TYR378 2.1 144.1 1.0
O B:ASN375 2.3 147.4 1.0
O B:ARG372 2.7 140.1 1.0
O B:ILE371 2.7 141.1 1.0
HA B:ARG372 3.2 166.3 1.0
C B:TYR378 3.3 148.4 1.0
C B:ARG372 3.4 140.4 1.0
C B:ASN375 3.4 146.7 1.0
HA B:PRO379 3.5 167.3 1.0
H B:ASN375 3.6 172.9 1.0
HB3 B:ASN375 3.7 177.7 1.0
CA B:ARG372 3.7 138.6 1.0
H B:TYR378 3.7 175.0 1.0
C B:ILE371 3.8 138.9 1.0
HA B:PRO376 3.9 172.8 1.0
HB2 B:TYR378 4.1 181.7 1.0
CA B:PRO379 4.1 139.4 1.0
N B:ASN375 4.2 144.1 1.0
CA B:ASN375 4.2 148.2 1.0
N B:PRO379 4.2 147.0 1.0
N B:TYR378 4.2 145.8 1.0
O B:PRO379 4.3 163.9 1.0
N B:ARG372 4.3 136.1 1.0
CA B:TYR378 4.3 149.3 1.0
C B:PRO379 4.3 156.2 1.0
N B:PRO376 4.3 135.5 1.0
N B:VAL373 4.3 140.3 1.0
CA B:PRO376 4.4 144.0 1.0
C B:PRO376 4.4 146.1 1.0
O B:PRO376 4.4 146.8 1.0
CB B:ASN375 4.4 148.1 1.0
HG3 B:MET322 4.6 197.8 1.0
HG22 B:ILE371 4.6 176.2 1.0
CB B:TYR378 4.7 151.4 1.0
C B:VAL373 4.7 137.8 1.0
O B:VAL373 4.8 133.8 1.0
HA B:VAL373 4.8 167.9 1.0
HG23 B:ILE371 4.9 176.2 1.0
H B:VAL373 4.9 168.3 1.0
CA B:VAL373 4.9 139.9 1.0
N B:ALA377 5.0 143.2 1.0

Reference:

G.Fritz, G.Fritz. N/A N/A.
ISSN: ESSN 1545-9985
Page generated: Fri Jul 28 03:03:08 2023

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