Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
      1w15
      1w16
      1w2b
      1w37
      1w4n
      1w5n
      1w5q
      1w5z
      1w6c
      1w6g
      1w7z
      1w8n
      1w8o
      1w90
      1w9s
      1w9t
      1w9w
      1w9x
      1wbj
      1wcq
      1wky
      1wn2
      1wnw
      1wnx
      1wp6
      1wpc
      1wpg
      1wpl
      1wqm
      1wqn
      1wqo
      1wqp
      1wqq
      1wqr
      1wte
      1wx1
      1wx5
      1wy4
      1wyw
      1wzo
      1x0a
      1x0g
      1x27
      1x70
      1x7d
      1x7u
      1x9j
      1x9z
      1xar
      1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 17 (801-850), PDB files 1w15 - 1xc6






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 801-850 (1w15 - 1xc6):
  1. 1w15 - Rat Synaptotagmin 4 C2B Domain in the Presence of Calcium
  2. 1w16 - Rat Synaptotagmin 4 C2B Domain in the Absence of Calcium
  3. 1w2b - Trigger Factor Ribosome Binding Domain in Complex With 50S
  4. 1w37 - 2-Keto-3-Deoxygluconate(Kdg) Aldolase of Sulfolobus Solfataricus
  5. 1w4n - Agao Covalent Complex With Tranylcypromine
  6. 1w5n - Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase of Pseudomonas Aeruginosa (Mutations D131C and D139C)
  7. 1w5q - Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase of Pseudomonas Aeruginosa (Mutations A129C, D131C, D139C, P132E, K229R)
  8. 1w5z - Agao Covalent Complex With Benzylhydrazine
  9. 1w6c - Agao Holoenzyme in A Small Cell, At 2.2 Angstroms
  10. 1w6g - Agao Holoenzyme At 1.55 Angstroms
  11. 1w7z - Crystal Structure of the Free (Uncomplexed) Ecballium Elaterium Trypsin Inhibitor (Eeti-II)
  12. 1w8n - Contribution of The Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase From Micromonospora Viridifaciens.
  13. 1w8o - Contribution of The Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase From Micromonospora Viridifaciens
  14. 1w90 - CBM29-2 Mutant D114A: Probing the Mechanism of Ligand Recognition By Family 29 Carbohydrate Binding Modules
  15. 1w9s - Structure of A Beta-1,3-Glucan Binding CBM6 From Bacillus Halodurans
  16. 1w9t - Structure of A Beta-1,3-Glucan Binding CBM6 From Bacillus Halodurans in Complex With Xylobiose
  17. 1w9w - Structure of A Beta-1,3-Glucan Binding CBM6 From Bacillus Halodurans in Complex With Laminarihexaose
  18. 1w9x - Bacillus Halmapalus Alpha Amylase
  19. 1wbj - Wildtype Tryptophan Synthase Complexed With Glycerol Phosphate
  20. 1wcq - Mutagenesis of the Nucleophilic Tyrosine in A Bacterial Sialidase to Phenylalanine.
  21. 1wky - Crystal Structure of Alkaline Mannanase From Bacillus Sp. Strain Jamb- 602: Catalytic Domain and Its Carbohydrate Binding Module
  22. 1wn2 - Crystal Structure of Project Id PH1539 From Pyrococcus Horikoshii OT3
  23. 1wnw - D136N Mutant of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo)
  24. 1wnx - D136E Mutant of Heme Oxygenase From Corynebacterium Diphtheriae (Hmuo)
  25. 1wp6 - Crystal Structure of Maltohexaose-Producing Amylase From Alkalophilic Bacillus Sp.707.
  26. 1wpc - Crystal Structure of Maltohexaose-Producing Amylase Complexed With Pseudo-Maltononaose
  27. 1wpg - Crystal Structure of the Sr CA2+-Atpase With MGF4
  28. 1wpl - Crystal Structure Of the Inhibitory Form of Rat Gtp Cyclohydrolase I/Gfrp Complex
  29. 1wqm - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  30. 1wqn - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  31. 1wqo - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  32. 1wqp - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  33. 1wqq - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  34. 1wqr - Contribution Of Hydrogen Bonds to the Conformational Stability of Human Lysozyme
  35. 1wte - Crystal Structure of Type II Restrcition Endonuclease, ECOO109I Complexed With Cognate Dna
  36. 1wx1 - Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8
  37. 1wx5 - Crystal Structure of The Copper-Free Streptomyces Castaneoglobisporus Tyrosinase Complexed With A Caddie Protein in the Monoclinic Crystal
  38. 1wy4 - Chicken Villin Subdomain Hp-35, K65(Nle), N68H, PH5.1
  39. 1wyw - Crystal Structure of SUMO1-Conjugated Thymine Dna Glycosylase
  40. 1wzo - Crystal Structure of the Hpce From Thermus Thermophilus HB8
  41. 1x0a - Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8
  42. 1x0g - Crystal Structure of Isca With the [2FE-2S] Cluster
  43. 1x27 - Crystal Structure Of Lck SH2-SH3 With SH2 Binding Site of P130CAS
  44. 1x70 - Human Dipeptidyl Peptidase IV in Complex With A Beta Amino Acid Inhibitor
  45. 1x7d - Crystal Structure Analysis of Ornithine Cyclodeaminase Complexed With Nad and Ornithine to 1.6 Angstroms
  46. 1x7u - Crystal Structure Of the S324T of Catalase-Peroxidase Katg
  47. 1x9j - Structure of Butyrate Kinase 2 Reveals Both Open- and Citrate-Induced Closed Conformations: Implications For Substrate-Induced Fit Conformational Changes
  48. 1x9z - Crystal Structure of the Mutl C-Terminal Domain
  49. 1xar - Crystal Structure Of A Fragment Of Dc-Signr (Containing The Carbohydrate Recognition Domain and Two Repeats of the Neck).
  50. 1xc6 - Native Structure of Beta-Galactosidase From Penicillium Sp. in Complex With Galactose


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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