Sodium in PDB 7zjb: Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D

The structure of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D, PDB code: 7zjb was solved by A.K.Votvik, A.K.Rohr, A.A.Stepnov, B.Bissaro, M.Sorlie, V.G.H.Eijsink, Z.Forsberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.81 / 1.37
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	59.08, 59.08, 145.718, 90, 90, 90
R / Rfree (%)	12.9 / 15.2

The structure of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D also contains other interesting chemical elements:

Copper

(Cu)

1 atom

The binding sites of Sodium atom in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D (pdb code 7zjb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D, PDB code: 7zjb:

Sodium binding site 1 out of 1 in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D within 5.0Å range: probe atom residue distance (Å) B Occ B:Na212 b:34.6 occ:1.00 OD1 B:ASP177 2.6 17.6 1.0 O B:HOH317 2.6 22.5 1.0 O B:HOH456 2.7 23.9 1.0 O B:HOH375 3.1 22.9 1.0 CG B:ASP177 3.5 16.9 1.0 O B:HIS157 3.8 15.1 1.0 CB B:ASP177 3.9 15.2 1.0 CB B:PRO116 4.0 21.3 1.0 O B:HOH377 4.0 24.0 1.0 CE2 B:TYR114 4.2 17.6 1.0 NH2 B:ARG10 4.2 17.8 1.0 CA B:ASP177 4.3 14.5 1.0 CD1 B:TRP81 4.5 18.8 1.0 O B:HOH395 4.5 20.7 1.0 C B:HIS157 4.5 14.2 1.0 CB B:LEU158 4.6 15.9 1.0 OD2 B:ASP177 4.6 16.8 1.0 OH B:TYR114 4.7 21.7 1.0 CB B:TRP81 4.8 16.1 1.0 CG B:PRO116 4.8 25.1 1.0 CD1 B:LEU158 4.8 17.9 1.0 CZ B:TYR114 4.9 17.5 1.0 O B:ARG78 5.0 20.0 1.0 CG B:TRP81 5.0 16.2 1.0

A.K.Votvik, A.K.Rohr, B.Bissaro, A.A.Stepnov, M.Sorlie, V.G.H.Eijsink, Z.Forsberg. Structural and Functional Characterization of the Catalytic Domain of A Cell-Wall Anchored Bacterial Lytic Polysaccharide Monooxygenase From Streptomyces Coelicolor. Sci Rep V. 13 5345 2023.
ISSN: ESSN 2045-2322
PubMed: 37005446
DOI: 10.1038/S41598-023-32263-7