Sodium in PDB 7z3f: Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form

The structure of Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form, PDB code: 7z3f was solved by P.Leone, G.Sciara, M.Ilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.26 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.477, 73.477, 112.902, 90, 90, 90
R / Rfree (%)	23.6 / 26

The structure of Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form also contains other interesting chemical elements:

Copper	(Cu)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form (pdb code 7z3f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form, PDB code: 7z3f:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:28.0 occ:1.00 OE2 A:GLU51 2.5 16.6 1.0 O A:HIS85 2.8 20.0 1.0 O A:VAL134 2.8 20.5 1.0 OE1 A:GLU51 3.1 18.1 1.0 CD A:GLU51 3.2 17.5 1.0 C A:HIS85 3.4 19.8 1.0 C A:VAL134 3.5 21.6 1.0 C A:GLN86 3.6 19.7 1.0 N A:PHE87 3.6 17.5 1.0 CA A:GLN86 3.6 20.9 1.0 CD1 A:LEU136 3.6 21.2 1.0 CG A:LEU136 3.7 20.7 1.0 N A:GLN86 3.7 19.8 1.0 N A:LEU136 3.8 20.4 1.0 CB A:LEU136 3.8 20.8 1.0 CG2 A:ILE73 3.9 18.4 1.0 CG1 A:VAL134 3.9 21.5 1.0 CA A:SER135 4.0 23.6 1.0 CB A:PHE87 4.0 17.5 1.0 N A:SER135 4.0 20.6 1.0 C A:SER135 4.1 22.0 1.0 O A:GLN86 4.2 17.4 1.0 CB A:VAL134 4.3 21.9 1.0 CA A:PHE87 4.4 18.0 1.0 CA A:LEU136 4.4 19.5 1.0 CA A:HIS85 4.5 19.1 1.0 CA A:VAL134 4.5 20.4 1.0 CB A:HIS85 4.6 19.5 1.0 CG A:GLU51 4.7 16.8 1.0 O A:SER135 5.0 20.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans, Oxidized Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Na204 b:26.4 occ:1.00 OE2 B:GLU51 2.5 24.3 1.0 O B:VAL134 2.8 22.1 1.0 O B:HIS85 2.9 22.6 1.0 OE1 B:GLU51 3.0 21.9 1.0 CD B:GLU51 3.1 23.1 1.0 C B:VAL134 3.5 24.3 1.0 C B:HIS85 3.5 22.9 1.0 CD1 B:LEU136 3.6 20.5 1.0 N B:LEU136 3.7 22.5 1.0 C B:GLN86 3.7 24.3 1.0 N B:PHE87 3.7 24.3 1.0 CG2 B:ILE73 3.7 19.9 1.0 CA B:GLN86 3.7 24.9 1.0 CG B:LEU136 3.7 20.4 1.0 N B:GLN86 3.8 24.1 1.0 CG1 B:VAL134 3.9 22.2 1.0 CB B:LEU136 3.9 20.8 1.0 CA B:SER135 3.9 25.5 1.0 N B:SER135 4.0 24.1 1.0 C B:SER135 4.1 23.3 1.0 CB B:PHE87 4.1 24.6 1.0 CB B:VAL134 4.3 24.0 1.0 O B:GLN86 4.3 24.6 1.0 CA B:LEU136 4.4 21.9 1.0 CA B:VAL134 4.5 23.8 1.0 CA B:PHE87 4.5 24.6 1.0 CG B:GLU51 4.6 23.2 1.0 CA B:HIS85 4.7 23.6 1.0 CB B:HIS85 4.7 22.8 1.0 CB B:ILE73 4.9 19.6 1.0 O B:SER135 4.9 23.6 1.0

P.Leone, G.Sciara, M.Ilbert. Crystal Structure of the Cupredoxin Acop From Acidithiobacillus Ferrooxidans To Be Published.