Sodium in PDB 7w8n: Microbial Hormone-Sensitive Lipase E53 Wild Type

The structure of Microbial Hormone-Sensitive Lipase E53 Wild Type, PDB code: 7w8n was solved by X.Yang, Z.Li, X.Xu, J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.71 / 1.75
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	70.576, 129.838, 221.079, 90, 90, 90
R / Rfree (%)	16.4 / 17.9

The binding sites of Sodium atom in the Microbial Hormone-Sensitive Lipase E53 Wild Type (pdb code 7w8n). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Microbial Hormone-Sensitive Lipase E53 Wild Type, PDB code: 7w8n:

Sodium binding site 1 out of 1 in the Microbial Hormone-Sensitive Lipase E53 Wild Type


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microbial Hormone-Sensitive Lipase E53 Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Na820 b:64.3 occ:1.00 O C:HOH1109 2.7 27.2 1.0 O C:HOH1008 3.2 47.5 1.0 O C:HOH1108 3.8 34.9 1.0 OD2 C:ASP98 3.9 33.0 1.0 O C:HOH983 4.2 35.1 1.0 HB2 C:ASP96 4.3 29.6 1.0 O A:HOH548 4.4 40.4 1.0 O C:HOH1030 4.4 47.1 1.0 HB2 C:LEU97 4.4 28.7 1.0 O C:HOH1154 4.5 47.3 1.0 HH22 C:ARG70 4.5 37.2 1.0 OD2 C:ASP119 4.5 28.9 1.0 O C:HOH957 4.6 36.5 1.0 HD12 C:LEU97 4.6 31.8 1.0 O A:HOH814 4.7 49.2 1.0 H C:LEU97 4.8 28.7 1.0 O3 C:GOL802 4.8 30.5 1.0 CG C:ASP98 4.8 33.6 1.0 OD2 C:ASP96 4.8 27.5 1.0

Y.Ding, L.Nie, X.C.Yang, Y.Li, Y.Y.Huo, Z.Li, Y.Gao, H.L.Cui, J.Li, X.W.Xu. Mechanism and Structural Insights Into A Novel Esterase, E53, Isolated From Erythrobacter Longus . Front Microbiol V. 12 98194 2021.
ISSN: ESSN 1664-302X
PubMed: 35069500
DOI: 10.3389/FMICB.2021.798194