Sodium in PDB 7vvr: Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K

All present enzymatic activity of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K:
7.1.1.9;

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr was solved by A.Shimada, T.Tsukihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.95 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	182.307, 204.706, 177.379, 90, 90, 90
R / Rfree (%)	15.2 / 17.6

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Zinc	(Zn)	2 atoms
Copper	(Cu)	6 atoms
Iron	(Fe)	4 atoms

The binding sites of Sodium atom in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K (pdb code 7vvr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range: probe atom residue distance (Å) B Occ A:Na605 b:25.7 occ:1.00 O A:HOH863 2.2 25.4 1.0 O A:GLY45 2.3 28.8 1.0 OE1 A:GLU40 2.3 28.8 1.0 O A:SER441 2.3 26.2 1.0 O A:GLU40 2.4 25.9 1.0 CD A:GLU40 3.3 31.1 1.0 C A:GLU40 3.4 26.9 1.0 O A:HOH809 3.4 34.3 1.0 C A:GLY45 3.5 30.8 1.0 CG A:GLU40 3.5 24.5 1.0 C A:SER441 3.5 26.6 1.0 O A:HOH896 3.8 32.0 1.0 CB A:ASP442 3.9 24.8 1.0 CA A:ASP442 3.9 24.2 1.0 O A:GLN43 3.9 26.2 1.0 CA A:THR46 4.0 29.3 1.0 CG A:ASP442 4.1 24.3 1.0 OD1 A:ASP442 4.2 28.3 1.0 N A:ASP442 4.2 25.3 1.0 N A:THR46 4.2 30.4 1.0 CA A:GLU40 4.3 23.8 1.0 N A:LEU41 4.3 26.3 1.0 CA A:LEU41 4.3 25.2 1.0 N A:LEU47 4.4 28.7 1.0 OE2 A:GLU40 4.4 28.7 1.0 N A:GLY45 4.5 27.1 1.0 CB A:GLU40 4.5 23.7 1.0 CA A:GLY45 4.6 31.2 1.0 C A:THR46 4.6 30.9 1.0 CD2 A:LEU41 4.6 26.1 1.0 CA A:SER441 4.7 24.0 1.0 OD2 A:ASP442 4.8 27.4 1.0 O A:HOH735 4.9 35.4 1.0 CB A:SER441 5.0 28.3 1.0

Sodium binding site 2 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range: probe atom residue distance (Å) B Occ N:Na605 b:30.7 occ:1.00 O N:HOH873 2.2 28.7 1.0 OE1 N:GLU40 2.3 35.0 1.0 O N:GLY45 2.3 33.4 1.0 O N:SER441 2.3 31.1 1.0 O N:GLU40 2.4 31.9 1.0 CD N:GLU40 3.2 36.8 1.0 C N:GLU40 3.4 30.6 1.0 O N:HOH784 3.5 39.7 1.0 CG N:GLU40 3.5 30.7 1.0 C N:GLY45 3.5 38.9 1.0 C N:SER441 3.5 31.7 1.0 CB N:ASP442 3.9 30.5 1.0 O N:HOH874 3.9 35.1 1.0 CA N:ASP442 3.9 30.7 1.0 O N:GLN43 4.0 32.1 1.0 CA N:THR46 4.0 37.5 1.0 CG N:ASP442 4.1 32.5 1.0 OD1 N:ASP442 4.1 32.3 1.0 N N:ASP442 4.2 31.8 1.0 N N:LEU41 4.2 28.9 1.0 N N:THR46 4.2 36.1 1.0 CA N:GLU40 4.3 29.3 1.0 CA N:LEU41 4.3 30.7 1.0 OE2 N:GLU40 4.4 36.0 1.0 N N:GLY45 4.4 32.2 1.0 CB N:GLU40 4.5 31.4 1.0 N N:LEU47 4.5 40.5 1.0 CD2 N:LEU41 4.6 29.9 1.0 CA N:GLY45 4.6 37.4 1.0 C N:THR46 4.7 44.9 1.0 CA N:SER441 4.7 30.2 1.0 OD2 N:ASP442 4.8 33.0 1.0

A.Shimada, T.Tsukihara. Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K To Be Published.