Sodium in PDB 7ul0: Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient

The structure of Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient, PDB code: 7ul0 was solved by Y.Chen, W.D.Tolbert, X.Bai, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.91 / 2.49
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.771, 100.709, 106.019, 90, 90, 90
R / Rfree (%)	22.5 / 25.6

The binding sites of Sodium atom in the Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient (pdb code 7ul0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient, PDB code: 7ul0:

Sodium binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sars-Cov-2 Rbd in Complex with the Ridge-Binding Nab EH8 Isolated From A Nonvaccinated Pediatric Patient within 5.0Å range: probe atom residue distance (Å) B Occ L:Na302 b:30.0 occ:1.00 NZ L:LYS103 4.3 65.8 1.0 OD2 L:ASP85 4.4 56.3 1.0 O H:GLY42 4.7 59.3 1.0 CG L:ASP85 4.7 54.1 1.0 O L:GLY100 4.8 45.2 1.0 OH L:TYR87 4.9 47.1 1.0 O L:GLY101 4.9 58.0 1.0 OD1 L:ASP85 5.0 49.1 1.0 O L:ALA8 5.0 56.5 1.0

Y.Chen, J.Prevost, I.Ullah, H.Romero, V.Lisi, W.D.Tolbert, J.R.Grover, S.Ding, S.Y.Gong, G.Beaudoin-Bussieres, R.Gasser, M.Benlarbi, D.Vezina, S.P.Anand, D.Chatterjee, G.Goyette, M.W.Grunst, Z.Yang, Y.Bo, F.Zhou, K.Beland, X.Bai, A.R.Zeher, R.K.Huang, D.N.Nguyen, R.Sherburn, D.Wu, G.Piszczek, B.Pare, D.Matthies, D.Xia, J.Richard, P.Kumar, W.Mothes, M.Cote, P.D.Uchil, V.P.Lavallee, M.A.Smith, M.Pazgier, E.Haddad, A.Finzi. Molecular Basis For Antiviral Activity of Two Pediatric Neutralizing Antibodies Targeting Sars-Cov-2 Spike Rbd. Iscience V. 26 05783 2023.
ISSN: ESSN 2589-0042
PubMed: 36514310
DOI: 10.1016/J.ISCI.2022.105783