Sodium in PDB 7uc8: PFS230 D1 Domain in Complex with 230AS-73

The structure of PFS230 D1 Domain in Complex with 230AS-73, PDB code: 7uc8 was solved by W.K.Tang, N.H.Tolia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 2.90
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	89.46, 89.46, 225.92, 90, 90, 120
R / Rfree (%)	21.5 / 25.2

The binding sites of Sodium atom in the PFS230 D1 Domain in Complex with 230AS-73 (pdb code 7uc8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the PFS230 D1 Domain in Complex with 230AS-73, PDB code: 7uc8:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the PFS230 D1 Domain in Complex with 230AS-73


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of PFS230 D1 Domain in Complex with 230AS-73 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na901 b:50.8 occ:1.00 HD22 B:ASN677 2.8 89.8 1.0 HZ3 B:LYS621 2.8 56.7 1.0 HZ1 B:LYS621 2.9 56.7 1.0 HZ2 B:LYS623 3.0 61.8 1.0 NZ B:LYS621 3.2 45.7 1.0 OE2 B:GLU689 3.6 44.9 1.0 HZ2 B:LYS621 3.6 56.7 1.0 ND2 B:ASN677 3.6 73.3 1.0 HD2 B:LYS623 3.8 48.3 1.0 OE2 B:GLU590 3.8 42.8 1.0 NZ B:LYS623 3.9 50.0 1.0 OD1 B:ASN677 4.0 98.5 1.0 HD21 B:ASN677 4.2 89.8 1.0 OE1 B:GLU590 4.2 62.7 1.0 CG B:ASN677 4.2 71.8 1.0 HZ3 B:LYS623 4.3 61.8 1.0 CD B:GLU590 4.3 46.5 1.0 HZ1 B:LYS623 4.3 61.8 1.0 HE3 B:LYS623 4.5 49.7 1.0 HE2 B:LYS621 4.5 55.2 1.0 CE B:LYS621 4.5 44.4 1.0 CE B:LYS623 4.6 39.9 1.0 CD B:LYS623 4.6 38.7 1.0 CD B:GLU689 4.6 46.3 1.0 OE1 B:GLU689 4.9 48.1 1.0

Sodium binding site 2 out of 2 in the PFS230 D1 Domain in Complex with 230AS-73


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of PFS230 D1 Domain in Complex with 230AS-73 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na901 b:65.7 occ:1.00 HZ1 C:LYS623 2.1 95.1 1.0 HZ2 C:LYS623 2.4 95.1 1.0 NZ C:LYS623 2.6 77.7 1.0 HZ1 C:LYS621 3.0 84.3 1.0 HD22 C:ASN677 3.2 88.7 1.0 HE3 C:LYS623 3.3 94.4 1.0 HE2 C:LYS623 3.3 94.4 1.0 CE C:LYS623 3.3 77.1 1.0 HZ2 C:LYS621 3.3 84.3 1.0 HZ3 C:LYS623 3.3 95.1 1.0 NZ C:LYS621 3.6 68.7 1.0 OE2 C:GLU689 3.7 73.7 1.0 OD1 C:ASN677 3.8 72.0 1.0 ND2 C:ASN677 4.0 72.4 1.0 OE2 C:GLU590 4.0 87.3 1.0 HZ3 C:LYS621 4.0 84.3 1.0 OE1 C:GLU590 4.0 74.1 1.0 CG C:ASN677 4.3 72.3 1.0 CD C:GLU590 4.4 71.5 1.0 HD21 C:ASN677 4.7 88.7 1.0 HE2 C:LYS621 4.7 81.9 1.0 CE C:LYS621 4.8 66.7 1.0 CD C:LYS623 4.8 61.8 1.0 CD C:GLU689 4.8 71.2 1.0

W.K.Tang, N.H.Tolia. Human Antibody Epitope Map of A Malaria Transmission Blocking Vaccine To Be Published.