Sodium in PDB 7u1r: Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.27 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.59, 78.54, 111.26, 90, 90, 90
R / Rfree (%)	18.3 / 19.6

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Zinc	(Zn)	1 atom
Cadmium	(Cd)	1 atom

The binding sites of Sodium atom in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 (pdb code 7u1r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r:

Sodium binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:39.9 occ:1.00 O A:HOH625 2.5 49.0 1.0 O A:HOH533 3.1 22.3 1.0 O A:HOH622 3.3 37.3 1.0 CG A:GLU154 3.6 25.4 1.0 N A:GLU154 3.6 20.3 1.0 CA A:HIS151 3.6 26.9 1.0 N A:ALA153 3.7 20.7 1.0 C A:HIS151 3.7 27.9 1.0 OE2 A:GLU154 3.8 29.9 1.0 CB A:ALA153 3.9 22.6 1.0 CD A:GLU154 3.9 27.8 1.0 N A:VAL152 4.0 25.2 1.0 CA A:ALA153 4.1 21.7 1.0 O A:HOH528 4.2 43.3 1.0 O A:HIS151 4.2 26.1 1.0 C A:ALA153 4.3 23.4 1.0 CB A:GLU154 4.3 20.5 1.0 N A:HIS151 4.4 28.2 1.0 CA A:GLU154 4.5 19.9 1.0 C A:VAL152 4.6 24.0 1.0 O A:TRP147 4.6 32.8 1.0 O A:HOH597 4.8 45.0 1.0 O A:GLU148 4.8 47.4 1.0 CB A:HIS151 4.8 28.7 1.0 OE1 A:GLU154 4.9 22.5 1.0 O A:HOH589 4.9 29.5 1.0 CA A:VAL152 4.9 23.7 1.0 O A:ARG131 5.0 32.2 1.0

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 To Be Published.