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Sodium in PDB 7u0o: Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916

Enzymatic activity of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916

All present enzymatic activity of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916:
1.3.1.9;

Protein crystallography data

The structure of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916, PDB code: 7u0o was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.38 / 2.05
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 79.3, 101.54, 76.48, 90, 114.36, 90
R / Rfree (%) 20.5 / 24.7

Other elements in 7u0o:

The structure of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916 (pdb code 7u0o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916, PDB code: 7u0o:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7u0o

Go back to Sodium Binding Sites List in 7u0o
Sodium binding site 1 out of 2 in the Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:41.1
occ:1.00
 O A:HOH505 2.2 37.6 1.0
O A:ASP223 2.4 35.6 1.0
O A:HOH512 2.6 37.1 1.0
O A:ALA226 2.6 27.4 1.0
O A:HOH516 2.7 45.9 1.0
O A:GLN224 2.9 38.4 1.0
C A:GLN224 3.4 38.4 1.0
CA A:GLN224 3.5 40.1 1.0
C A:ASP223 3.5 36.5 1.0
C A:ALA226 3.7 26.3 1.0
N A:GLN224 4.0 38.6 1.0
N A:ALA226 4.2 26.4 1.0
N A:GLY229 4.2 25.1 1.0
CA A:GLY229 4.3 29.5 1.0
N A:ARG225 4.4 37.2 1.0
O A:HOH409 4.4 36.3 1.0
CA A:ALA226 4.5 22.4 1.0
C A:ARG225 4.5 33.4 1.0
O A:PRO227 4.6 27.6 1.0
N A:PRO227 4.6 26.7 1.0
O A:HOH527 4.7 49.9 1.0
C A:PRO227 4.7 24.3 1.0
CA A:PRO227 4.7 25.6 1.0
OD1 A:ASP223 4.8 34.8 1.0
CB A:ALA226 4.8 25.4 1.0
CA A:ASP223 4.8 35.6 1.0
CB A:GLN224 4.8 43.7 1.0
O A:HOH482 4.8 43.6 1.0
O A:ARG225 4.9 33.0 1.0

Sodium binding site 2 out of 2 in 7u0o

Go back to Sodium Binding Sites List in 7u0o
Sodium binding site 2 out of 2 in the Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na303

b:35.4
occ:1.00
 O B:HOH502 2.1 36.2 1.0
O B:HOH509 2.4 45.8 1.0
O B:ASP223 2.4 32.1 1.0
O B:ALA226 2.5 27.4 1.0
O B:GLN224 2.6 33.9 1.0
O B:HOH507 2.9 37.1 1.0
C B:GLN224 3.2 31.9 1.0
CA B:GLN224 3.4 35.7 1.0
C B:ASP223 3.5 33.9 1.0
C B:ALA226 3.7 25.3 1.0
N B:GLN224 3.9 35.3 1.0
N B:ALA226 4.1 26.1 1.0
N B:ARG225 4.2 30.6 1.0
C B:ARG225 4.3 25.2 1.0
CA B:ALA226 4.4 21.1 1.0
N B:GLY229 4.4 26.8 1.0
CA B:GLY229 4.5 27.4 1.0
N B:PRO227 4.6 25.8 1.0
CA B:PRO227 4.7 27.5 1.0
CB B:GLN224 4.7 43.5 1.0
O B:ARG225 4.8 24.9 1.0
C B:PRO227 4.8 22.4 1.0
CB B:ALA226 4.8 23.7 1.0
CA B:ARG225 4.8 32.6 1.0
O B:PRO227 4.8 27.9 1.0
CA B:ASP223 4.8 33.4 1.0
O B:HOH488 4.9 37.5 1.0

Reference:

T.E.Edwards, J.Abendroth, N.D.Debouver, P.S.Horanyi, D.D.Lorimer, Seattle Structural Genomics Center Forinfectious Disease. Crystal Structure of An Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Fortuitum Bound to Nad and Nitd-916 To Be Published.
Page generated: Wed Oct 9 09:09:27 2024

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