Atomistry » Sodium » PDB 7t3s-7u1r » 7txq
Atomistry »
  Sodium »
    PDB 7t3s-7u1r »
      7txq »

Sodium in PDB 7txq: X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea

Protein crystallography data

The structure of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea, PDB code: 7txq was solved by N.R.Herkert, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.46 / 1.65
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 97.413, 97.413, 72.842, 90, 90, 120
R / Rfree (%) 17.2 / 20.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea (pdb code 7txq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea, PDB code: 7txq:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7txq

Go back to Sodium Binding Sites List in 7txq
Sodium binding site 1 out of 2 in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:8.4
occ:0.33
O A:HOH434 2.4 17.6 1.0
OD1 A:ASN130 2.4 17.6 1.0
CG A:ASN130 3.4 14.1 1.0
ND2 A:ASN130 3.7 16.9 1.0
O A:HOH574 4.3 18.4 1.0
O A:GLY112 4.6 10.3 1.0
CB A:ASN130 4.8 11.2 1.0

Sodium binding site 2 out of 2 in 7txq

Go back to Sodium Binding Sites List in 7txq
Sodium binding site 2 out of 2 in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in the Present of Tdp and Acetyl-Coenzymea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:3.6
occ:0.33
OD1 A:ASN166 2.3 8.1 1.0
O A:HOH448 2.3 9.7 1.0
CG A:ASN166 3.3 7.3 1.0
ND2 A:ASN166 3.6 7.3 1.0
O A:ASN148 4.3 6.5 1.0
O A:HOH487 4.3 15.2 1.0
CB A:ASN148 4.5 6.8 1.0
CB A:ASN166 4.7 7.3 1.0

Reference:

N.R.Herkert, J.B.Thoden, H.M.Holden. Structure and Function of An N-Acetyltransferase From the Human Pathogen Acinetobacter Baumannii Isolate BAL_212. Proteins V. 90 1594 2022.
ISSN: ESSN 1097-0134
PubMed: 35277885
DOI: 10.1002/PROT.26334
Page generated: Wed Oct 9 09:08:51 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy