Sodium in PDB 7txp: X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose

The structure of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose, PDB code: 7txp was solved by N.R.Herkert, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.47 / 1.45
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	97.001, 97.001, 73.285, 90, 90, 120
R / Rfree (%)	17.7 / 19.4

The binding sites of Sodium atom in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose (pdb code 7txp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose, PDB code: 7txp:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:7.9 occ:0.33 O A:HOH496 2.2 12.2 1.0 OD1 A:ASN130 2.3 9.0 1.0 CG A:ASN130 3.3 7.9 1.0 ND2 A:ASN130 3.7 7.7 1.0 O A:HOH588 4.4 13.5 1.0 O A:GLY112 4.6 8.0 1.0 CB A:ASN130 4.6 7.2 1.0

Sodium binding site 2 out of 2 in the X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of the Viob N-Acetyltransferase From Acinetobacter Baumannii in Complex with Tdp-4-Amino-4,6-Dideoxy-D-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:4.5 occ:0.33 OD1 A:ASN166 2.1 6.6 1.0 O A:HOH430 2.1 6.8 1.0 CG A:ASN166 3.1 6.4 1.0 ND2 A:ASN166 3.5 7.8 1.0 O A:ASN148 4.2 6.5 1.0 O A:HOH503 4.3 8.2 1.0 CB A:ASN166 4.4 6.3 1.0 CB A:ASN148 4.6 5.8 1.0 CA A:ASN166 4.9 5.8 1.0

N.R.Herkert, J.B.Thoden, H.M.Holden. Structure and Function of An N-Acetyltransferase From the Human Pathogen Acinetobacter Baumannii Isolate BAL_212. Proteins V. 90 1594 2022.
ISSN: ESSN 1097-0134
PubMed: 35277885
DOI: 10.1002/PROT.26334