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Sodium in PDB 7sgj: Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711
Enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711
All present enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711:
3.5.1.48; 3.5.1.62;
3.5.1.48; 3.5.1.62;
Protein crystallography data
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711, PDB code: 7sgj
was solved by
C.J.Herbst-Gervasoni,
D.W.Christianson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 69.64 / 2.15 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 80.408, 80.408, 248.27, 90, 90, 120 |
| R / Rfree (%) | 18.2 / 21.6 |
Other elements in 7sgj:
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711 also contains other interesting chemical elements:
| Potassium | (K) | 2 atoms |
| Zinc | (Zn) | 1 atom |
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711
(pdb code 7sgj). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711, PDB code: 7sgj:
In total only one binding site of Sodium was determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711, PDB code: 7sgj:
Sodium binding site 1 out of 1 in 7sgj
Go back to
Sodium Binding Sites List in 7sgj
Sodium binding site 1 out
of 1 in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with Dkfz-711 within 5.0Å range:
|
Reference:
R.R.Steimbach,
C.J.Herbst-Gervasoni,
S.Lechner,
T.M.Stewart,
G.Klinke,
J.Ridinger,
M.N.E.Geraldy,
G.Tihanyi,
J.R.Foley,
U.Uhrig,
B.Kuster,
G.Poschet,
R.A.Casero Jr.,
G.Medard,
I.Oehme,
D.W.Christianson,
N.Gunkel,
A.K.Miller.
Aza-Saha Derivatives Are Selective Histone Deacetylase 10 Chemical Probes That Inhibit Polyamine Deacetylation and Phenocopy HDAC10 Knockout. J.Am.Chem.Soc. V. 144 18861 2022.
ISSN: ESSN 1520-5126
PubMed: 36200994
DOI: 10.1021/JACS.2C05030
Page generated: Wed Oct 9 08:57:00 2024
ISSN: ESSN 1520-5126
PubMed: 36200994
DOI: 10.1021/JACS.2C05030
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