Sodium in PDB 7sa2: Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01

The structure of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01, PDB code: 7sa2 was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.533, 79.242, 111.579, 90, 90, 90
R / Rfree (%)	17.4 / 19.6

The structure of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Cadmium

(Cd)

2 atoms

The binding sites of Sodium atom in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 (pdb code 7sa2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01, PDB code: 7sa2:

Sodium binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:32.8 occ:1.00 O B:LEU87 2.4 39.8 1.0 O B:HIS84 2.7 27.3 1.0 OD1 B:ASN83 2.9 34.4 1.0 C B:LEU87 3.6 40.3 1.0 C B:HIS84 3.7 27.1 1.0 CG B:ASN83 3.8 47.9 1.0 ND2 B:ASN83 4.1 48.5 1.0 CA B:VAL85 4.2 27.1 1.0 N B:HIS84 4.3 19.3 1.0 N B:LEU87 4.3 31.9 1.0 CA B:LEU87 4.3 33.3 1.0 N B:VAL85 4.3 26.1 1.0 O B:VAL85 4.4 34.1 1.0 C B:VAL85 4.4 32.4 1.0 CB B:LEU87 4.5 32.9 1.0 CA B:HIS84 4.6 19.1 1.0 N B:SER88 4.7 40.0 1.0 O B:SER88 4.7 46.1 1.0 C B:SER88 4.8 44.6 1.0 CA B:SER88 5.0 40.8 1.0

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 To Be Published.