Sodium in PDB 7s7w: Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein

The structure of Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein, PDB code: 7s7w was solved by C.Fan, A.V.Shivange, L.L.Looger, H.A.Lester, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.54 / 1.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.801, 61.215, 58.803, 90, 100.44, 90
R / Rfree (%)	17.3 / 19.8

The binding sites of Sodium atom in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein (pdb code 7s7w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein, PDB code: 7s7w:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:17.5 occ:1.00 O A:ALA216 2.8 10.9 1.0 O A:PHE107 2.8 12.7 1.0 N A:GLY106 2.9 12.4 0.3 N A:GLY106 2.9 11.3 0.7 N A:PHE107 3.2 13.7 1.0 C A:GLY106 3.2 14.3 0.3 N A:LEU105 3.3 10.9 1.0 N A:ALA216 3.3 10.8 1.0 CB A:PRO104 3.4 13.2 1.0 CA A:GLY106 3.6 13.7 0.3 O A:GLY106 3.6 15.8 0.3 CA A:GLY106 3.7 12.7 0.7 C A:ALA216 3.7 10.2 1.0 C A:PHE107 3.7 12.8 1.0 C A:GLY106 3.7 13.1 0.7 CD1 A:TYR215 3.7 16.4 1.0 CB A:TYR215 3.8 12.8 1.0 C A:PRO104 3.8 11.0 1.0 C A:TYR215 3.8 11.1 1.0 C A:LEU105 3.8 11.5 1.0 CA A:PRO104 3.8 11.4 1.0 CA A:TYR215 3.9 11.7 1.0 O A:HOH420 3.9 24.3 1.0 CA A:LEU105 3.9 10.5 1.0 CA A:ALA216 3.9 10.6 1.0 CA A:PHE107 4.0 13.5 1.0 CB A:LEU105 4.2 10.8 1.0 CG A:TYR215 4.2 14.2 1.0 CB A:ALA216 4.3 11.0 1.0 O A:PRO104 4.7 11.6 1.0 O A:TYR215 4.7 11.8 1.0 CG A:PRO104 4.7 14.3 1.0 O A:GLY106 4.7 14.8 0.7 CE1 A:TYR215 4.8 18.2 1.0 N A:ASN108 4.9 13.1 1.0 CG A:PHE107 4.9 13.3 1.0 N A:ALA217 4.9 10.0 1.0 CD2 A:PHE107 5.0 14.2 1.0 O A:LEU105 5.0 12.5 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:18.9 occ:1.00 O A:ILE99 2.7 14.3 1.0 O A:LYS90 2.7 14.3 1.0 O A:HOH539 2.8 19.4 1.0 N A:TRP101 2.9 11.8 1.0 CA A:VAL100 3.2 13.0 1.0 C A:LYS90 3.5 14.3 1.0 C A:VAL100 3.5 11.7 1.0 CG A:LYS90 3.6 14.7 1.0 CA A:LYS90 3.6 12.9 1.0 C A:ILE99 3.6 13.1 1.0 CD1 A:TRP101 3.7 11.8 1.0 N A:LYS94 3.7 15.5 1.0 CB A:LYS94 3.7 17.9 1.0 N A:VAL100 3.9 13.1 1.0 CB A:TRP101 4.0 12.6 1.0 CA A:TRP101 4.1 11.5 1.0 CA A:LYS94 4.1 16.6 1.0 CB A:LYS90 4.1 14.3 1.0 CB A:TYR93 4.2 13.9 1.0 CG A:TRP101 4.2 11.8 1.0 NZ A:LYS90 4.3 20.2 1.0 CB A:VAL100 4.4 14.0 1.0 C A:TYR93 4.4 14.6 1.0 O A:VAL89 4.5 13.8 1.0 CG1 A:VAL100 4.6 15.4 1.0 O A:VAL100 4.7 11.7 1.0 CD A:LYS90 4.8 17.0 1.0 CA A:TYR93 4.8 14.9 1.0 O A:HOH714 4.8 31.8 1.0 N A:LYS91 4.8 15.1 1.0 CG2 A:VAL100 4.8 15.5 1.0 NE1 A:TRP101 4.8 11.6 1.0 N A:LYS90 4.8 13.0 1.0 CG A:LYS94 4.8 20.1 1.0 O A:TRP101 4.8 12.8 1.0 C A:TRP101 5.0 11.4 1.0 CE A:LYS90 5.0 19.3 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:31.9 occ:1.00 O A:HOH445 2.6 42.9 1.0 CG A:LYS272 2.8 22.7 0.5 O A:HOH469 2.9 25.2 1.0 O A:PHE268 2.9 15.1 1.0 CD1 A:PHE268 3.3 16.4 1.0 CD A:LYS272 3.4 21.3 0.5 CB A:GLU271 3.5 18.7 1.0 CE1 A:PHE268 3.6 17.0 1.0 C A:PHE268 3.7 14.5 1.0 N A:LYS272 3.8 18.5 1.0 CA A:PHE268 3.8 14.9 1.0 C A:GLU271 3.9 17.8 1.0 CG A:PHE268 3.9 14.8 1.0 CB A:LYS272 3.9 22.6 0.5 CD A:LYS272 3.9 22.7 0.6 CB A:LYS272 3.9 21.9 0.6 CG A:LYS272 3.9 21.0 0.6 CA A:GLU271 4.2 17.0 1.0 CA A:LYS272 4.3 20.0 0.5 OE1 A:GLU271 4.3 26.1 1.0 O A:GLU271 4.4 20.0 1.0 CZ A:PHE268 4.4 16.9 1.0 CA A:LYS272 4.4 19.9 0.6 CB A:PHE268 4.4 14.8 1.0 CD2 A:PHE268 4.6 15.1 1.0 N A:GLU271 4.6 15.8 1.0 CE A:LYS272 4.7 20.9 0.5 O A:GLU267 4.7 16.2 1.0 CE2 A:PHE268 4.8 15.9 1.0 CG A:GLU271 4.8 21.7 1.0 O A:HOH735 4.9 38.3 1.0 CE A:LYS272 5.0 22.5 0.6

Sodium binding site 4 out of 4 in the Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na305 b:39.4 occ:1.00 OH A:TYR153 2.8 25.6 1.0 NE2 A:GLN157 3.1 33.1 1.0 O A:PHE164 3.2 19.6 1.0 O A:HOH630 3.4 48.6 1.0 O A:HOH538 3.6 42.1 1.0 CZ A:TYR153 3.6 24.6 1.0 N A:PHE164 3.7 17.5 1.0 CE2 A:TYR153 3.7 25.3 1.0 CG2 A:THR167 3.8 22.1 1.0 CB A:PHE164 4.0 18.1 1.0 C A:PHE164 4.0 18.9 1.0 CD A:GLN157 4.1 32.6 1.0 CA A:PHE164 4.1 18.0 1.0 C A:LYS163 4.2 18.7 1.0 O A:PHE162 4.4 20.5 1.0 CA A:LYS163 4.4 20.4 1.0 OE1 A:GLN157 4.6 33.5 1.0 CD2 A:PHE164 4.8 18.8 1.0 C A:PHE162 4.8 19.3 1.0 N A:LYS163 4.8 19.3 1.0 CG A:PHE164 4.9 17.5 1.0 CE1 A:TYR153 4.9 24.2 1.0 CG A:GLN157 5.0 30.6 1.0 O A:LYS163 5.0 19.7 1.0

C.Fan, D.C.Rees, H.A.Lester. Crystal Structure of Inicsnfr 3.0 Fluorescent Nicotine Sensor Precursor Binding Protein To Be Published.