Sodium in PDB 7s7r: Plasmodium Falciparum Protein PF12 Bound to Nanobody G7

The structure of Plasmodium Falciparum Protein PF12 Bound to Nanobody G7, PDB code: 7s7r was solved by M.H.Dietrich, W.H.Tham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.70 / 1.77
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	50.931, 50.931, 322.764, 90, 90, 120
R / Rfree (%)	22.1 / 25.5

The binding sites of Sodium atom in the Plasmodium Falciparum Protein PF12 Bound to Nanobody G7 (pdb code 7s7r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Plasmodium Falciparum Protein PF12 Bound to Nanobody G7, PDB code: 7s7r:

Sodium binding site 1 out of 1 in the Plasmodium Falciparum Protein PF12 Bound to Nanobody G7


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Plasmodium Falciparum Protein PF12 Bound to Nanobody G7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:33.8 occ:1.00 O B:HOH357 2.4 50.1 1.0 O B:ASN109 2.7 38.9 1.0 C B:ASN109 3.8 35.9 1.0 CA B:TYR110 4.4 36.9 1.0 N B:TYR110 4.6 37.8 1.0 CA B:ASN109 4.8 39.7 1.0 O B:TRP111 4.9 35.1 1.0 CB B:ASN109 4.9 43.6 1.0 O B:HOH316 5.0 33.5 1.0

M.H.Dietrich, L.J.Chan, A.Adair, C.Boulet, M.T.O'neill, L.L.Tan, S.Keremane, Y.F.Mok, A.W.Lo, P.Gilson, W.H.Tham. Structure of the PF12 and PF41 Heterodimeric Complex of Plasmodium Falciparum 6-Cysteine Proteins. Fems Microbes V. 3 AC005 2022.
ISSN: ISSN 2633-6685
PubMed: 35308105
DOI: 10.1093/FEMSMC/XTAC005