Sodium in PDB 7s16: Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant

The structure of Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant, PDB code: 7s16 was solved by D.Dey, S.Singh, S.Khan, M.Martin, N.Schnicker, L.Gakhar, B.Pierce, S.S.Hasan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.97 / 1.24
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.868, 56.712, 70.548, 90, 99.37, 90
R / Rfree (%)	13.5 / 15.9

The binding sites of Sodium atom in the Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant (pdb code 7s16). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant, PDB code: 7s16:

Sodium binding site 1 out of 1 in the Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alpha-Cop-WD40 Domain R57A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:60.8 occ:1.00 O A:HOH631 2.4 30.2 1.0 O A:HOH811 2.8 19.8 1.0 O A:HOH712 3.1 56.2 1.0 O A:HOH822 3.3 54.5 1.0 O A:HOH725 3.4 16.5 1.0 O A:HOH836 3.6 46.7 1.0 O A:HOH827 3.7 25.8 1.0 O A:HOH694 3.8 19.8 1.0 O A:HOH634 4.3 15.9 1.0 O A:HOH803 4.3 18.8 1.0 O A:PHE145 4.5 14.6 1.0 O A:HOH657 4.6 23.5 1.0 CB A:ALA144 4.6 12.8 1.0 O A:HOH599 4.9 13.6 1.0

D.Dey, S.Singh, S.Khan, M.Martin, N.J.Schnicker, L.Gakhar, B.G.Pierce, S.S.Hasan. An Extended Motif in the Sars-Cov-2 Spike Modulates Binding and Release of Host Coatomer in Retrograde Trafficking Commun Biol V. 5 115 2022.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-022-03063-Y