Sodium in PDB 7rzd: Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide

The structure of Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide, PDB code: 7rzd was solved by Y.Patskovsky, L.Patskovska, S.Nyovanie, A.Natarajan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.47 / 1.82
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.897, 65.897, 238.899, 90, 90, 90
R / Rfree (%)	18 / 23.6

The structure of Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide (pdb code 7rzd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide, PDB code: 7rzd:

Sodium binding site 1 out of 1 in the Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na103 b:46.3 occ:1.00 O B:LEU87 2.3 32.5 1.0 O B:HOH206 2.3 36.0 1.0 O B:HOH293 2.4 63.8 1.0 O B:HOH324 2.4 33.1 0.5 O B:HIS84 2.5 26.2 1.0 C B:LEU87 3.4 34.2 1.0 C B:HIS84 3.5 28.1 1.0 N B:HIS84 4.0 25.1 1.0 N B:LEU87 4.0 29.8 1.0 O B:HOH324 4.1 31.0 0.5 CA B:LEU87 4.1 28.9 1.0 CB B:LEU87 4.1 27.0 1.0 CA B:VAL85 4.3 25.6 1.0 N B:VAL85 4.3 24.4 1.0 C B:VAL85 4.3 33.9 1.0 O B:VAL85 4.4 28.7 1.0 OD1 B:ASN83 4.4 43.4 1.0 CA B:HIS84 4.4 27.4 1.0 N B:SER88 4.5 33.5 1.0 C B:SER88 4.7 40.5 1.0 CA B:SER88 4.7 35.9 1.0 N B:GLN89 4.9 30.2 1.0 C B:ASN83 4.9 25.7 1.0 O B:SER88 5.0 39.9 1.0

Y.Patskovsky, L.Patskovska, S.Nyovanie, A.Nataragan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard. Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide To Be Published.