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Sodium in PDB 7rrp: Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector

Enzymatic activity of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector

All present enzymatic activity of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector:
1.16.3.1;

Other elements in 7rrp:

The structure of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector also contains other interesting chemical elements:

Zinc (Zn) 206 atoms

Sodium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Sodium atom in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector (pdb code 7rrp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 72 binding sites of Sodium where determined in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector, PDB code: 7rrp:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 72 in 7rrp

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Sodium binding site 1 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:9.0
occ:1.00
 O A:HOH376 2.4 9.0 1.0
HD22 A:ASN21 2.6 10.5 1.0
HA A:ALA18 2.7 12.0 1.0
O A:HOH308 2.9 6.0 1.0
O A:HOH307 3.0 7.5 1.0
HG2 A:GLU17 3.0 10.5 1.0
HB2 A:ALA18 3.2 4.5 1.0
ND2 A:ASN21 3.3 10.5 1.0
CA A:ALA18 3.4 12.0 1.0
HD21 A:ASN21 3.4 10.5 1.0
N A:ALA18 3.5 9.0 1.0
CB A:ALA18 3.8 4.5 1.0
H A:ALA18 3.8 9.0 1.0
C A:GLU17 3.9 16.5 1.0
CG A:GLU17 3.9 10.5 1.0
HD2 A:PHE81 3.9 18.0 1.0
HB3 A:GLU17 4.0 13.5 1.0
O A:GLU17 4.0 7.5 1.0
HB1 A:ALA18 4.1 4.5 1.0
HB2 A:ASN21 4.1 9.0 1.0
CD A:GLU17 4.2 7.5 1.0
CB A:GLU17 4.4 13.5 1.0
OE2 A:GLU17 4.4 18.0 1.0
CG A:ASN21 4.4 12.0 1.0
O A:HOH352 4.5 9.0 1.0
HB3 A:ALA18 4.6 4.5 1.0
HG3 A:GLU17 4.6 10.5 1.0
C A:ALA18 4.7 18.0 1.0
O A:GLN14 4.7 7.5 1.0
CD2 A:PHE81 4.7 18.0 1.0
CA A:GLU17 4.8 10.5 1.0
CB A:ASN21 4.8 9.0 1.0
HB2 A:PHE81 4.9 10.5 1.0
O A:ARG79 4.9 9.0 1.0
OE1 A:GLU17 4.9 13.5 1.0
HE22 A:GLN73 4.9 7.5 1.0
HE2 A:PHE81 5.0 25.5 1.0

Sodium binding site 2 out of 72 in 7rrp

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Sodium binding site 2 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na208

b:12.0
occ:1.00
 O A:HOH352 2.3 9.0 1.0
HH11 A:ARG22 2.3 12.0 1.0
HD3 A:ARG22 2.6 12.0 1.0
HG3 A:ARG22 2.8 10.5 1.0
HB1 A:ALA18 3.1 4.5 1.0
NH1 A:ARG22 3.2 12.0 1.0
CD A:ARG22 3.3 12.0 1.0
CG A:ARG22 3.4 10.5 1.0
HG2 A:ARG22 3.5 10.5 1.0
HH12 A:ARG22 3.6 12.0 1.0
O A:HOH396 3.9 15.0 1.0
CB A:ALA18 4.0 4.5 1.0
HD2 A:ARG22 4.0 12.0 1.0
O A:ALA18 4.0 6.0 1.0
CZ A:ARG22 4.1 27.0 1.0
NE A:ARG22 4.1 12.0 1.0
C A:ALA18 4.5 18.0 1.0
HA A:ALA18 4.5 12.0 1.0
HB2 A:ALA18 4.5 4.5 1.0
HB3 A:ALA18 4.5 4.5 1.0
CA A:ALA18 4.6 12.0 1.0
O A:HOH376 4.7 9.0 1.0
CB A:ARG22 4.8 7.5 1.0
H A:ARG22 4.9 10.5 1.0
HE A:ARG22 5.0 12.0 1.0

Sodium binding site 3 out of 72 in 7rrp

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Sodium binding site 3 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na210

b:15.0
occ:1.00
 OE1 A:GLN75 2.0 7.5 1.0
CD A:GLN75 2.0 15.0 1.0
HB3 A:GLN75 2.1 9.0 1.0
HB2 A:GLN75 2.3 9.0 1.0
CB A:GLN75 2.5 9.0 1.0
NE2 A:GLN75 2.6 10.5 1.0
O F:HOH322 2.6 13.5 1.0
CG A:GLN75 2.7 10.5 1.0
HG11 F:VAL142 2.7 7.5 1.0
HG12 F:VAL142 2.7 7.5 1.0
HE22 A:GLN75 2.9 10.5 1.0
HE21 A:GLN75 3.1 10.5 1.0
CG1 F:VAL142 3.1 7.5 1.0
HG2 A:GLN75 3.2 10.5 1.0
HE1 A:HIS128 3.2 13.5 1.0
HD22 A:LEU72 3.3 7.5 1.0
HG3 A:GLN75 3.4 10.5 1.0
HA A:LEU72 3.5 10.5 1.0
HD23 A:LEU72 3.5 7.5 1.0
HG13 F:VAL142 3.6 7.5 1.0
CD2 A:LEU72 3.9 7.5 1.0
CE1 A:HIS128 3.9 13.5 1.0
OD1 F:ASN139 3.9 12.0 1.0
CA A:GLN75 3.9 12.0 1.0
HG2 A:ARG76 4.2 9.0 1.0
NE2 A:HIS128 4.2 7.5 1.0
HD21 A:LEU72 4.3 7.5 1.0
HB F:VAL142 4.4 9.0 1.0
HA A:GLN75 4.4 12.0 1.0
CB F:VAL142 4.4 9.0 1.0
C A:GLN75 4.4 12.0 1.0
CA A:LEU72 4.4 10.5 1.0
O A:HOH380 4.5 6.0 1.0
O A:LEU72 4.5 4.5 1.0
H A:GLN75 4.5 7.5 1.0
HD3 A:ARG76 4.6 10.5 1.0
HD2 A:ARG76 4.6 10.5 1.0
HG2 F:LYS143 4.7 7.5 1.0
O A:HOH381 4.8 4.5 1.0
N A:GLN75 4.8 7.5 1.0
HE2 A:LYS71 4.8 25.5 1.0
N A:ARG76 4.8 9.0 1.0
O A:LYS71 4.8 4.5 1.0
HG21 F:VAL142 4.8 7.5 1.0
H A:ARG76 4.9 9.0 1.0
HG3 F:LYS143 4.9 7.5 1.0
O A:GLN75 4.9 4.5 1.0
CD A:ARG76 4.9 10.5 1.0
HG2 A:LYS71 5.0 7.5 1.0
CG A:ARG76 5.0 9.0 1.0

Sodium binding site 4 out of 72 in 7rrp

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Sodium binding site 4 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na207

b:19.5
occ:1.00
 O B:HOH352 2.3 10.5 1.0
HH11 B:ARG22 2.3 13.5 1.0
HD3 B:ARG22 2.6 18.0 1.0
HG3 B:ARG22 2.8 10.5 1.0
HB1 B:ALA18 3.1 3.0 1.0
NH1 B:ARG22 3.2 13.5 1.0
CD B:ARG22 3.3 18.0 1.0
CG B:ARG22 3.4 10.5 1.0
HG2 B:ARG22 3.5 10.5 1.0
HH12 B:ARG22 3.6 13.5 1.0
O B:HOH396 3.9 13.5 1.0
CB B:ALA18 4.0 3.0 1.0
HD2 B:ARG22 4.0 18.0 1.0
O B:ALA18 4.0 7.5 1.0
CZ B:ARG22 4.1 27.0 1.0
NE B:ARG22 4.1 9.0 1.0
C B:ALA18 4.5 15.0 1.0
HA B:ALA18 4.5 12.0 1.0
HB2 B:ALA18 4.5 3.0 1.0
HB3 B:ALA18 4.5 3.0 1.0
CA B:ALA18 4.6 12.0 1.0
O B:HOH376 4.7 10.5 1.0
CB B:ARG22 4.8 7.5 1.0
H B:ARG22 4.9 12.0 1.0
HE B:ARG22 5.0 9.0 1.0

Sodium binding site 5 out of 72 in 7rrp

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Sodium binding site 5 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na209

b:21.0
occ:1.00
 OE1 B:GLN75 2.0 6.0 1.0
CD B:GLN75 2.0 12.0 1.0
HB3 B:GLN75 2.1 9.0 1.0
HB2 B:GLN75 2.3 9.0 1.0
CB B:GLN75 2.5 9.0 1.0
NE2 B:GLN75 2.6 10.5 1.0
O S:HOH322 2.6 12.0 1.0
CG B:GLN75 2.7 9.0 1.0
HG11 S:VAL142 2.7 4.5 1.0
HG12 S:VAL142 2.7 4.5 1.0
HE22 B:GLN75 2.9 10.5 1.0
HE21 B:GLN75 3.1 10.5 1.0
CG1 S:VAL142 3.1 4.5 1.0
HG2 B:GLN75 3.2 9.0 1.0
HE1 B:HIS128 3.2 12.0 1.0
HD22 B:LEU72 3.3 7.5 1.0
HG3 B:GLN75 3.4 9.0 1.0
HA B:LEU72 3.5 10.5 1.0
HD23 B:LEU72 3.5 7.5 1.0
HG13 S:VAL142 3.6 4.5 1.0
CD2 B:LEU72 3.9 7.5 1.0
CE1 B:HIS128 3.9 12.0 1.0
OD1 S:ASN139 3.9 10.5 1.0
CA B:GLN75 3.9 10.5 1.0
HG2 B:ARG76 4.2 10.5 1.0
NE2 B:HIS128 4.2 9.0 1.0
HD21 B:LEU72 4.3 7.5 1.0
HB S:VAL142 4.4 9.0 1.0
HA B:GLN75 4.4 10.5 1.0
CB S:VAL142 4.4 9.0 1.0
C B:GLN75 4.4 10.5 1.0
CA B:LEU72 4.5 10.5 1.0
O B:HOH380 4.5 9.0 1.0
O B:LEU72 4.5 7.5 1.0
H B:GLN75 4.5 9.0 1.0
HD2 B:ARG76 4.6 9.0 1.0
HD3 B:ARG76 4.6 9.0 1.0
HG2 S:LYS143 4.7 7.5 1.0
O B:HOH381 4.8 6.0 1.0
N B:GLN75 4.8 9.0 1.0
HE2 B:LYS71 4.8 24.0 1.0
N B:ARG76 4.8 9.0 1.0
O B:LYS71 4.8 6.0 1.0
HG21 S:VAL142 4.8 6.0 1.0
H B:ARG76 4.9 9.0 1.0
HG3 S:LYS143 4.9 7.5 1.0
O B:GLN75 4.9 4.5 1.0
CD B:ARG76 4.9 9.0 1.0
HG2 B:LYS71 5.0 9.0 1.0
CG B:ARG76 5.0 10.5 1.0

Sodium binding site 6 out of 72 in 7rrp

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Sodium binding site 6 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na210

b:9.0
occ:1.00
 O B:HOH376 2.4 10.5 1.0
HD22 B:ASN21 2.6 10.5 1.0
HA B:ALA18 2.7 12.0 1.0
O B:HOH308 2.9 6.0 1.0
O B:HOH307 3.0 6.0 1.0
HG2 B:GLU17 3.0 7.5 1.0
HB2 B:ALA18 3.2 3.0 1.0
ND2 B:ASN21 3.3 10.5 1.0
CA B:ALA18 3.4 12.0 1.0
HD21 B:ASN21 3.4 10.5 1.0
N B:ALA18 3.5 9.0 1.0
CB B:ALA18 3.8 3.0 1.0
H B:ALA18 3.8 9.0 1.0
C B:GLU17 3.9 15.0 1.0
CG B:GLU17 3.9 7.5 1.0
HD2 B:PHE81 3.9 22.5 1.0
HB3 B:GLU17 4.0 18.0 1.0
O B:GLU17 4.0 9.0 1.0
HB1 B:ALA18 4.1 3.0 1.0
HB2 B:ASN21 4.1 9.0 1.0
CD B:GLU17 4.2 9.0 1.0
CB B:GLU17 4.4 18.0 1.0
OE2 B:GLU17 4.4 18.0 1.0
CG B:ASN21 4.4 10.5 1.0
O B:HOH352 4.5 10.5 1.0
HB3 B:ALA18 4.6 3.0 1.0
HG3 B:GLU17 4.6 7.5 1.0
C B:ALA18 4.7 15.0 1.0
O B:GLN14 4.7 7.5 1.0
CD2 B:PHE81 4.7 22.5 1.0
CA B:GLU17 4.8 9.0 1.0
CB B:ASN21 4.8 9.0 1.0
HB2 B:PHE81 4.9 10.5 1.0
O B:ARG79 4.9 7.5 1.0
OE1 B:GLU17 4.9 12.0 1.0
HE22 B:GLN73 4.9 7.5 1.0
HE2 B:PHE81 5.0 25.5 1.0

Sodium binding site 7 out of 72 in 7rrp

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Sodium binding site 7 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na207

b:22.5
occ:1.00
 O C:HOH352 2.3 9.0 1.0
HH11 C:ARG22 2.3 15.0 1.0
HD3 C:ARG22 2.6 15.0 1.0
HG3 C:ARG22 2.8 10.5 1.0
HB1 C:ALA18 3.1 4.5 1.0
NH1 C:ARG22 3.2 15.0 1.0
CD C:ARG22 3.3 15.0 1.0
CG C:ARG22 3.4 10.5 1.0
HG2 C:ARG22 3.5 10.5 1.0
HH12 C:ARG22 3.6 15.0 1.0
O C:HOH396 3.9 13.5 1.0
CB C:ALA18 4.0 4.5 1.0
HD2 C:ARG22 4.0 15.0 1.0
O C:ALA18 4.0 9.0 1.0
CZ C:ARG22 4.1 25.5 1.0
NE C:ARG22 4.1 13.5 1.0
C C:ALA18 4.5 13.5 1.0
HA C:ALA18 4.5 10.5 1.0
HB2 C:ALA18 4.5 4.5 1.0
HB3 C:ALA18 4.5 4.5 1.0
CA C:ALA18 4.6 10.5 1.0
O C:HOH376 4.7 12.0 1.0
CB C:ARG22 4.8 7.5 1.0
H C:ARG22 4.9 13.5 1.0
HE C:ARG22 5.0 13.5 1.0

Sodium binding site 8 out of 72 in 7rrp

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Sodium binding site 8 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na209

b:19.5
occ:1.00
 OE1 C:GLN75 2.0 6.0 1.0
CD C:GLN75 2.0 13.5 1.0
HB3 C:GLN75 2.1 9.0 1.0
HB2 C:GLN75 2.3 9.0 1.0
CB C:GLN75 2.5 9.0 1.0
NE2 C:GLN75 2.6 12.0 1.0
O P:HOH322 2.6 12.0 1.0
CG C:GLN75 2.7 9.0 1.0
HG11 P:VAL142 2.7 7.5 1.0
HG12 P:VAL142 2.7 7.5 1.0
HE22 C:GLN75 2.9 12.0 1.0
HE21 C:GLN75 3.1 12.0 1.0
CG1 P:VAL142 3.1 7.5 1.0
HG2 C:GLN75 3.2 9.0 1.0
HE1 C:HIS128 3.2 12.0 1.0
HD22 C:LEU72 3.3 6.0 1.0
HG3 C:GLN75 3.4 9.0 1.0
HA C:LEU72 3.5 10.5 1.0
HD23 C:LEU72 3.5 6.0 1.0
HG13 P:VAL142 3.6 7.5 1.0
CD2 C:LEU72 3.9 6.0 1.0
CE1 C:HIS128 3.9 12.0 1.0
OD1 P:ASN139 3.9 9.0 1.0
CA C:GLN75 3.9 10.5 1.0
HG2 C:ARG76 4.2 9.0 1.0
NE2 C:HIS128 4.2 7.5 1.0
HD21 C:LEU72 4.3 6.0 1.0
HB P:VAL142 4.4 9.0 1.0
HA C:GLN75 4.4 10.5 1.0
CB P:VAL142 4.4 9.0 1.0
C C:GLN75 4.4 10.5 1.0
CA C:LEU72 4.5 10.5 1.0
O C:HOH380 4.5 7.5 1.0
O C:LEU72 4.5 7.5 1.0
H C:GLN75 4.5 9.0 1.0
HD3 C:ARG76 4.6 10.5 1.0
HD2 C:ARG76 4.6 10.5 1.0
HG2 P:LYS143 4.7 6.0 1.0
O C:HOH381 4.8 6.0 1.0
N C:GLN75 4.8 9.0 1.0
HE2 C:LYS71 4.8 21.0 1.0
N C:ARG76 4.8 7.5 1.0
O C:LYS71 4.8 6.0 1.0
HG21 P:VAL142 4.8 7.5 1.0
H C:ARG76 4.9 7.5 1.0
HG3 P:LYS143 4.9 6.0 1.0
O C:GLN75 4.9 4.5 1.0
CD C:ARG76 4.9 10.5 1.0
HG2 C:LYS71 5.0 10.5 1.0
CG C:ARG76 5.0 9.0 1.0

Sodium binding site 9 out of 72 in 7rrp

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Sodium binding site 9 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na210

b:9.0
occ:1.00
 O C:HOH376 2.4 12.0 1.0
HD22 C:ASN21 2.6 10.5 1.0
HA C:ALA18 2.7 10.5 1.0
O C:HOH308 2.9 6.0 1.0
O C:HOH307 3.0 6.0 1.0
HG2 C:GLU17 3.0 9.0 1.0
HB2 C:ALA18 3.2 4.5 1.0
ND2 C:ASN21 3.3 10.5 1.0
CA C:ALA18 3.4 10.5 1.0
HD21 C:ASN21 3.4 10.5 1.0
N C:ALA18 3.5 7.5 1.0
CB C:ALA18 3.8 4.5 1.0
H C:ALA18 3.8 7.5 1.0
C C:GLU17 3.9 13.5 1.0
CG C:GLU17 3.9 9.0 1.0
HD2 C:PHE81 3.9 25.5 1.0
HB3 C:GLU17 4.0 18.0 1.0
O C:GLU17 4.0 7.5 1.0
HB1 C:ALA18 4.1 4.5 1.0
HB2 C:ASN21 4.1 9.0 1.0
CD C:GLU17 4.2 9.0 1.0
CB C:GLU17 4.4 18.0 1.0
OE2 C:GLU17 4.4 18.0 1.0
CG C:ASN21 4.4 10.5 1.0
O C:HOH352 4.5 9.0 1.0
HB3 C:ALA18 4.6 4.5 1.0
HG3 C:GLU17 4.6 9.0 1.0
C C:ALA18 4.7 13.5 1.0
O C:GLN14 4.7 6.0 1.0
CD2 C:PHE81 4.7 25.5 1.0
CA C:GLU17 4.8 9.0 1.0
CB C:ASN21 4.8 9.0 1.0
HB2 C:PHE81 4.9 10.5 1.0
O C:ARG79 4.9 6.0 1.0
OE1 C:GLU17 4.9 13.5 1.0
HE22 C:GLN73 4.9 6.0 1.0
HE2 C:PHE81 5.0 30.0 1.0

Sodium binding site 10 out of 72 in 7rrp

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Sodium binding site 10 out of 72 in the Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na208

b:10.5
occ:1.00
 O D:HOH376 2.4 12.0 1.0
HD22 D:ASN21 2.6 10.5 1.0
HA D:ALA18 2.7 9.0 1.0
O D:HOH308 2.9 6.0 1.0
O D:HOH307 3.0 7.5 1.0
HG2 D:GLU17 3.0 10.5 1.0
HB2 D:ALA18 3.2 4.5 1.0
ND2 D:ASN21 3.3 10.5 1.0
CA D:ALA18 3.4 9.0 1.0
HD21 D:ASN21 3.4 10.5 1.0
N D:ALA18 3.5 10.5 1.0
CB D:ALA18 3.8 4.5 1.0
H D:ALA18 3.8 10.5 1.0
C D:GLU17 3.9 10.5 1.0
CG D:GLU17 3.9 10.5 1.0
HD2 D:PHE81 3.9 19.5 1.0
HB3 D:GLU17 4.0 16.5 1.0
O D:GLU17 4.0 9.0 1.0
HB1 D:ALA18 4.1 4.5 1.0
HB2 D:ASN21 4.1 7.5 1.0
CD D:GLU17 4.2 7.5 1.0
CB D:GLU17 4.4 16.5 1.0
OE2 D:GLU17 4.4 16.5 1.0
CG D:ASN21 4.4 12.0 1.0
O D:HOH353 4.5 9.0 1.0
HB3 D:ALA18 4.6 4.5 1.0
HG3 D:GLU17 4.6 10.5 1.0
C D:ALA18 4.7 15.0 1.0
O D:GLN14 4.7 7.5 1.0
CD2 D:PHE81 4.7 19.5 1.0
CA D:GLU17 4.8 12.0 1.0
CB D:ASN21 4.8 7.5 1.0
HB2 D:PHE81 4.9 10.5 1.0
O D:ARG79 4.9 9.0 1.0
OE1 D:GLU17 4.9 13.5 1.0
HE22 D:GLN73 4.9 6.0 1.0
HE2 D:PHE81 5.0 28.5 1.0

Reference:

K.Zhang, G.D.Pintilie, S.Li, M.F.Schmid, W.Chiu. Resolving Individual Atoms of Protein Complex By Cryo-Electron Microscopy Cell Res. V. 30 1136 2020.
ISSN: ISSN 1748-7838
PubMed: 33139928
DOI: 10.1007/S41048-016-0026-3
Page generated: Wed Oct 9 08:41:00 2024

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