Sodium in PDB 7roo: Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide

The structure of Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide, PDB code: 7roo was solved by T.B.Ruskoski, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.78 / 1.52
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	93.47, 138.656, 99.511, 90, 90, 90
R / Rfree (%)	16.9 / 19.8

The structure of Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	10 atoms
Bromine	(Br)	4 atoms

The binding sites of Sodium atom in the Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide (pdb code 7roo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide, PDB code: 7roo:

Sodium binding site 1 out of 1 in the Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na724 b:24.1 occ:1.00 CB A:LYS162 3.7 17.9 1.0 CD2 A:PHE166 4.0 17.6 1.0 CE2 A:PHE166 4.2 20.4 1.0 CE A:LYS162 4.3 30.8 1.0 CD A:LYS162 4.5 27.8 1.0 CD A:PRO163 4.6 16.1 1.0 CG A:LYS162 4.6 22.4 1.0 NZ A:LYS162 4.7 35.0 1.0 CA A:LYS162 4.8 16.6 1.0

N.R.Braffman, T.B.Ruskoski, K.M.Davis, N.R.Glasser, C.Johnson, C.D.Okafor, A.K.Boal, E.P.Balskus. Structural Basis For An Unprecedented Enzymatic Alkylation in Cylindrocyclophane Biosynthesis. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35212625
DOI: 10.7554/ELIFE.75761