Sodium in PDB 7rec: Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc

Protein crystallography data

The structure of Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc, PDB code: 7rec was solved by E.D.Mcspadden, C.C.Chi, C.L.Gee, J.Kuriyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 91.48 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 101.433, 182.958, 106.466, 90, 90, 90
R / Rfree (%) 20.9 / 24.4

Other elements in 7rec:

The structure of Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc (pdb code 7rec). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc, PDB code: 7rec:

Sodium binding site 1 out of 1 in 7rec

Go back to Sodium Binding Sites List in 7rec
Sodium binding site 1 out of 1 in the Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na502

b:79.2
occ:1.00
OH C:TYR398 2.5 65.8 1.0
OG1 D:THR446 2.8 73.8 1.0
CE1 C:TYR398 3.1 62.4 1.0
CZ C:TYR398 3.2 62.3 1.0
C D:ARG445 3.3 75.8 1.0
O D:ARG445 3.5 75.6 1.0
CA D:ARG445 3.6 84.0 1.0
N D:THR446 3.6 70.3 1.0
N D:ARG445 3.7 85.2 1.0
C D:PRO444 3.8 87.2 1.0
O D:PRO444 3.8 87.5 1.0
CB D:THR446 3.8 69.3 1.0
CG C:GLU383 4.1 61.7 1.0
CA D:THR446 4.2 67.6 1.0
CB C:GLU383 4.3 56.4 1.0
CB D:PRO444 4.4 91.7 1.0
CD1 C:TYR398 4.4 63.9 1.0
CE2 C:TYR398 4.6 62.3 1.0
CA D:PRO444 4.7 91.5 1.0
O C:GLU383 4.7 50.0 1.0
CA C:GLU383 4.8 52.0 1.0
CG D:GLN436 4.8 61.9 1.0

Reference:

U.Leurs, A.B.Klein, E.D.Mcspadden, N.Griem-Krey, S.M.O.Solbak, J.Houlton, I.S.Villumsen, S.B.Vogensen, L.Hamborg, S.J.Gauger, L.B.Palmelund, A.S.G.Larsen, M.A.Shehata, C.D.Kelstrup, J.V.Olsen, A.Bach, R.O.Burnie, D.S.Kerr, E.Gowing, S.M.W.Teurlings, C.C.Chi, C.Gee, B.Frolund, B.R.Kornum, G.M.Van Woerden, R.P.Clausen, J.Kuriyan, A.N.Clarkson, P.Wollendorph. Ghb Analogs Confer Neuroprotection Through Specific Interaction with the Camkiialpha Hub Domain Proc.Natl.Acad.Sci.Usa 2021.
ISSN: ESSN 1091-6490
Page generated: Sat Aug 21 17:24:52 2021

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