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Sodium in PDB 7r5o: 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2

Sodium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Sodium atom in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 (pdb code 7r5o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 24 binding sites of Sodium where determined in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2, PDB code: 7r5o:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 24 in 7r5o

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Sodium binding site 1 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na500

b:4.0
occ:1.00
 O A:HOH612 2.0 29.8 1.0
OE1 A:GLU27 2.1 22.6 1.0
ND1 A:HIS65 2.1 22.2 1.0
O A:HOH606 2.1 21.8 1.0
OE1 A:GLU62 2.2 25.7 1.0
CD A:GLU27 3.0 21.6 1.0
CE1 A:HIS65 3.1 22.1 1.0
CD A:GLU62 3.1 23.7 1.0
CG A:HIS65 3.2 17.9 1.0
OE2 A:GLU62 3.3 32.3 1.0
OE2 A:GLU27 3.3 20.7 1.0
O A:HOH601 3.5 25.7 1.0
CB A:HIS65 3.5 13.2 1.0
OE1 A:GLN141 4.0 28.3 1.0
O A:HOH631 4.0 35.2 1.0
NE2 A:HIS65 4.2 21.8 1.0
CG1 A:VAL110 4.2 16.8 1.0
CD2 A:HIS65 4.3 20.5 1.0
CG A:GLU27 4.4 16.9 1.0
CG A:GLU62 4.5 17.0 1.0
CA A:GLU62 4.5 12.1 1.0
CB A:GLU62 4.7 12.6 1.0
CB A:GLU27 4.8 12.1 1.0
O A:HOH602 4.8 40.4 1.0
CD A:GLN141 4.9 21.3 1.0

Sodium binding site 2 out of 24 in 7r5o

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Sodium binding site 2 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na500

b:4.0
occ:1.00
 O B:HOH612 2.0 29.8 1.0
OE1 B:GLU27 2.1 22.5 1.0
ND1 B:HIS65 2.1 22.2 1.0
O B:HOH606 2.1 21.8 1.0
OE1 B:GLU62 2.2 25.7 1.0
CD B:GLU27 3.0 21.6 1.0
CE1 B:HIS65 3.1 22.1 1.0
CD B:GLU62 3.1 23.7 1.0
CG B:HIS65 3.2 17.8 1.0
OE2 B:GLU62 3.3 32.3 1.0
OE2 B:GLU27 3.3 20.7 1.0
O B:HOH601 3.5 25.7 1.0
CB B:HIS65 3.5 13.2 1.0
OE1 B:GLN141 4.0 28.3 1.0
O B:HOH631 4.0 35.2 1.0
NE2 B:HIS65 4.2 21.8 1.0
CG1 B:VAL110 4.2 16.8 1.0
CD2 B:HIS65 4.3 20.5 1.0
CG B:GLU27 4.4 16.9 1.0
CG B:GLU62 4.5 17.0 1.0
CA B:GLU62 4.5 12.0 1.0
CB B:GLU62 4.7 12.6 1.0
CB B:GLU27 4.8 12.1 1.0
O B:HOH602 4.8 40.3 1.0
CD B:GLN141 4.9 21.3 1.0

Sodium binding site 3 out of 24 in 7r5o

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Sodium binding site 3 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na500

b:4.1
occ:1.00
 O C:HOH613 2.0 29.8 1.0
OE1 C:GLU27 2.1 22.5 1.0
ND1 C:HIS65 2.1 22.3 1.0
O C:HOH606 2.1 21.8 1.0
OE1 C:GLU62 2.2 25.7 1.0
CD C:GLU27 3.0 21.6 1.0
CE1 C:HIS65 3.1 22.1 1.0
CD C:GLU62 3.1 23.7 1.0
CG C:HIS65 3.2 17.9 1.0
OE2 C:GLU62 3.3 32.3 1.0
OE2 C:GLU27 3.3 20.7 1.0
O C:HOH601 3.5 25.7 1.0
CB C:HIS65 3.5 13.2 1.0
OE1 C:GLN141 4.0 28.3 1.0
O C:HOH631 4.0 35.3 1.0
NE2 C:HIS65 4.2 21.8 1.0
CG1 C:VAL110 4.2 16.8 1.0
CD2 C:HIS65 4.3 20.5 1.0
CG C:GLU27 4.4 16.9 1.0
CG C:GLU62 4.5 17.0 1.0
CA C:GLU62 4.5 12.0 1.0
CB C:GLU62 4.7 12.6 1.0
CB C:GLU27 4.8 12.1 1.0
O C:HOH602 4.8 40.3 1.0
CD C:GLN141 4.9 21.3 1.0

Sodium binding site 4 out of 24 in 7r5o

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Sodium binding site 4 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na500

b:4.1
occ:1.00
 O D:HOH612 2.0 29.8 1.0
OE1 D:GLU27 2.1 22.5 1.0
ND1 D:HIS65 2.1 22.2 1.0
O D:HOH606 2.1 21.7 1.0
OE1 D:GLU62 2.2 25.7 1.0
CD D:GLU27 3.0 21.6 1.0
CE1 D:HIS65 3.1 22.1 1.0
CD D:GLU62 3.1 23.7 1.0
CG D:HIS65 3.2 17.9 1.0
OE2 D:GLU62 3.3 32.3 1.0
OE2 D:GLU27 3.3 20.7 1.0
O D:HOH601 3.5 25.7 1.0
CB D:HIS65 3.5 13.2 1.0
OE1 D:GLN141 4.0 28.3 1.0
O D:HOH631 4.0 35.3 1.0
NE2 D:HIS65 4.2 21.8 1.0
CG1 D:VAL110 4.2 16.8 1.0
CD2 D:HIS65 4.3 20.5 1.0
CG D:GLU27 4.4 16.9 1.0
CG D:GLU62 4.5 17.0 1.0
CA D:GLU62 4.5 12.0 1.0
CB D:GLU62 4.7 12.6 1.0
CB D:GLU27 4.8 12.1 1.0
O D:HOH602 4.8 40.4 1.0
CD D:GLN141 4.9 21.3 1.0

Sodium binding site 5 out of 24 in 7r5o

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Sodium binding site 5 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na500

b:4.1
occ:1.00
 O E:HOH612 2.0 29.8 1.0
OE1 E:GLU27 2.1 22.5 1.0
ND1 E:HIS65 2.1 22.2 1.0
O E:HOH606 2.1 21.7 1.0
OE1 E:GLU62 2.2 25.7 1.0
CD E:GLU27 3.0 21.6 1.0
CE1 E:HIS65 3.1 22.1 1.0
CD E:GLU62 3.1 23.7 1.0
CG E:HIS65 3.2 17.9 1.0
OE2 E:GLU62 3.3 32.3 1.0
OE2 E:GLU27 3.3 20.7 1.0
O E:HOH601 3.5 25.7 1.0
CB E:HIS65 3.5 13.2 1.0
OE1 E:GLN141 4.0 28.3 1.0
O E:HOH631 4.0 35.3 1.0
NE2 E:HIS65 4.2 21.8 1.0
CG1 E:VAL110 4.2 16.8 1.0
CD2 E:HIS65 4.3 20.5 1.0
CG E:GLU27 4.4 16.9 1.0
CG E:GLU62 4.5 17.0 1.0
CA E:GLU62 4.5 12.0 1.0
CB E:GLU62 4.7 12.6 1.0
CB E:GLU27 4.8 12.1 1.0
O E:HOH602 4.8 40.4 1.0
CD E:GLN141 4.9 21.3 1.0

Sodium binding site 6 out of 24 in 7r5o

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Sodium binding site 6 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Na500

b:4.0
occ:1.00
 O F:HOH613 2.0 29.8 1.0
OE1 F:GLU27 2.1 22.5 1.0
ND1 F:HIS65 2.1 22.2 1.0
O F:HOH606 2.1 21.8 1.0
OE1 F:GLU62 2.2 25.7 1.0
CD F:GLU27 3.0 21.6 1.0
CE1 F:HIS65 3.1 22.1 1.0
CD F:GLU62 3.1 23.7 1.0
CG F:HIS65 3.2 17.9 1.0
OE2 F:GLU62 3.3 32.3 1.0
OE2 F:GLU27 3.3 20.7 1.0
O F:HOH601 3.5 25.7 1.0
CB F:HIS65 3.5 13.2 1.0
OE1 F:GLN141 4.0 28.3 1.0
O F:HOH631 4.0 35.2 1.0
NE2 F:HIS65 4.2 21.8 1.0
CG1 F:VAL110 4.2 16.8 1.0
CD2 F:HIS65 4.3 20.5 1.0
CG F:GLU27 4.4 16.9 1.0
CG F:GLU62 4.5 17.0 1.0
CA F:GLU62 4.5 12.0 1.0
CB F:GLU62 4.7 12.6 1.0
CB F:GLU27 4.8 12.1 1.0
O F:HOH602 4.8 40.4 1.0
CD F:GLN141 4.9 21.3 1.0

Sodium binding site 7 out of 24 in 7r5o

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Sodium binding site 7 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Na500

b:4.0
occ:1.00
 O G:HOH613 2.0 29.8 1.0
OE1 G:GLU27 2.1 22.5 1.0
ND1 G:HIS65 2.1 22.2 1.0
O G:HOH606 2.1 21.8 1.0
OE1 G:GLU62 2.2 25.7 1.0
CD G:GLU27 3.0 21.6 1.0
CE1 G:HIS65 3.1 22.1 1.0
CD G:GLU62 3.1 23.7 1.0
CG G:HIS65 3.2 17.8 1.0
OE2 G:GLU62 3.3 32.3 1.0
OE2 G:GLU27 3.3 20.7 1.0
O G:HOH601 3.5 25.7 1.0
CB G:HIS65 3.5 13.2 1.0
OE1 G:GLN141 4.0 28.3 1.0
O G:HOH631 4.0 35.2 1.0
NE2 G:HIS65 4.2 21.8 1.0
CG1 G:VAL110 4.2 16.8 1.0
CD2 G:HIS65 4.3 20.5 1.0
CG G:GLU27 4.4 16.9 1.0
CG G:GLU62 4.5 17.0 1.0
CA G:GLU62 4.5 12.0 1.0
CB G:GLU62 4.7 12.6 1.0
CB G:GLU27 4.8 12.1 1.0
O G:HOH602 4.8 40.3 1.0
CD G:GLN141 4.9 21.3 1.0

Sodium binding site 8 out of 24 in 7r5o

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Sodium binding site 8 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Na500

b:4.1
occ:1.00
 O H:HOH613 2.0 29.8 1.0
OE1 H:GLU27 2.1 22.5 1.0
ND1 H:HIS65 2.1 22.2 1.0
O H:HOH606 2.1 21.7 1.0
OE1 H:GLU62 2.2 25.7 1.0
CD H:GLU27 3.0 21.6 1.0
CE1 H:HIS65 3.1 22.1 1.0
CD H:GLU62 3.1 23.7 1.0
CG H:HIS65 3.2 17.8 1.0
OE2 H:GLU62 3.3 32.3 1.0
OE2 H:GLU27 3.3 20.7 1.0
O H:HOH601 3.5 25.7 1.0
CB H:HIS65 3.5 13.2 1.0
OE1 H:GLN141 4.0 28.3 1.0
O H:HOH631 4.0 35.3 1.0
NE2 H:HIS65 4.2 21.8 1.0
CG1 H:VAL110 4.2 16.8 1.0
CD2 H:HIS65 4.3 20.5 1.0
CG H:GLU27 4.4 16.9 1.0
CG H:GLU62 4.5 17.0 1.0
CA H:GLU62 4.5 12.0 1.0
CB H:GLU62 4.7 12.6 1.0
CB H:GLU27 4.8 12.1 1.0
O H:HOH602 4.8 40.3 1.0
CD H:GLN141 4.9 21.3 1.0

Sodium binding site 9 out of 24 in 7r5o

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Sodium binding site 9 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Na500

b:4.0
occ:1.00
 O I:HOH612 2.0 29.8 1.0
OE1 I:GLU27 2.1 22.5 1.0
ND1 I:HIS65 2.1 22.2 1.0
O I:HOH605 2.1 21.8 1.0
OE1 I:GLU62 2.2 25.7 1.0
CD I:GLU27 3.0 21.6 1.0
CE1 I:HIS65 3.1 22.1 1.0
CD I:GLU62 3.1 23.7 1.0
CG I:HIS65 3.2 17.9 1.0
OE2 I:GLU62 3.3 32.3 1.0
OE2 I:GLU27 3.3 20.7 1.0
O I:HOH601 3.5 25.7 1.0
CB I:HIS65 3.5 13.2 1.0
OE1 I:GLN141 4.0 28.2 1.0
O I:HOH630 4.0 35.3 1.0
NE2 I:HIS65 4.2 21.8 1.0
CG1 I:VAL110 4.2 16.8 1.0
CD2 I:HIS65 4.3 20.5 1.0
CG I:GLU27 4.4 16.9 1.0
CG I:GLU62 4.5 17.0 1.0
CA I:GLU62 4.5 12.0 1.0
CB I:GLU62 4.7 12.6 1.0
CB I:GLU27 4.8 12.1 1.0
O I:HOH602 4.8 40.4 1.0
CD I:GLN141 4.9 21.3 1.0

Sodium binding site 10 out of 24 in 7r5o

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Sodium binding site 10 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Na500

b:4.0
occ:1.00
 O J:HOH611 2.0 29.7 1.0
OE1 J:GLU27 2.1 22.5 1.0
ND1 J:HIS65 2.1 22.2 1.0
O J:HOH605 2.1 21.8 1.0
OE1 J:GLU62 2.2 25.7 1.0
CD J:GLU27 3.0 21.6 1.0
CE1 J:HIS65 3.1 22.1 1.0
CD J:GLU62 3.1 23.7 1.0
CG J:HIS65 3.2 17.9 1.0
OE2 J:GLU62 3.3 32.3 1.0
OE2 J:GLU27 3.3 20.7 1.0
O J:HOH601 3.5 25.7 1.0
CB J:HIS65 3.5 13.2 1.0
OE1 J:GLN141 4.0 28.3 1.0
O J:HOH630 4.0 35.3 1.0
NE2 J:HIS65 4.2 21.8 1.0
CG1 J:VAL110 4.2 16.8 1.0
CD2 J:HIS65 4.3 20.5 1.0
CG J:GLU27 4.4 16.9 1.0
CG J:GLU62 4.5 17.0 1.0
CA J:GLU62 4.5 12.0 1.0
CB J:GLU62 4.7 12.6 1.0
CB J:GLU27 4.8 12.1 1.0
O J:HOH602 4.8 40.4 1.0
CD J:GLN141 4.9 21.3 1.0

Reference:

D.K.Clare, D.K.Clare. N/A N/A.
Page generated: Wed Oct 9 08:28:15 2024

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