Atomistry » Sodium » PDB 7qtd-7rga » 7r5o
Atomistry »
  Sodium »
    PDB 7qtd-7rga »
      7r5o »

Sodium in PDB 7r5o: 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2

Sodium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Sodium atom in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 (pdb code 7r5o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 24 binding sites of Sodium where determined in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2, PDB code: 7r5o:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 1 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na500

b:4.0
occ:1.00
 O A:HOH612 2.0 29.8 1.0
OE1 A:GLU27 2.1 22.6 1.0
ND1 A:HIS65 2.1 22.2 1.0
O A:HOH606 2.1 21.8 1.0
OE1 A:GLU62 2.2 25.7 1.0
CD A:GLU27 3.0 21.6 1.0
CE1 A:HIS65 3.1 22.1 1.0
CD A:GLU62 3.1 23.7 1.0
CG A:HIS65 3.2 17.9 1.0
OE2 A:GLU62 3.3 32.3 1.0
OE2 A:GLU27 3.3 20.7 1.0
O A:HOH601 3.5 25.7 1.0
CB A:HIS65 3.5 13.2 1.0
OE1 A:GLN141 4.0 28.3 1.0
O A:HOH631 4.0 35.2 1.0
NE2 A:HIS65 4.2 21.8 1.0
CG1 A:VAL110 4.2 16.8 1.0
CD2 A:HIS65 4.3 20.5 1.0
CG A:GLU27 4.4 16.9 1.0
CG A:GLU62 4.5 17.0 1.0
CA A:GLU62 4.5 12.1 1.0
CB A:GLU62 4.7 12.6 1.0
CB A:GLU27 4.8 12.1 1.0
O A:HOH602 4.8 40.4 1.0
CD A:GLN141 4.9 21.3 1.0

Sodium binding site 2 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 2 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na500

b:4.0
occ:1.00
 O B:HOH612 2.0 29.8 1.0
OE1 B:GLU27 2.1 22.5 1.0
ND1 B:HIS65 2.1 22.2 1.0
O B:HOH606 2.1 21.8 1.0
OE1 B:GLU62 2.2 25.7 1.0
CD B:GLU27 3.0 21.6 1.0
CE1 B:HIS65 3.1 22.1 1.0
CD B:GLU62 3.1 23.7 1.0
CG B:HIS65 3.2 17.8 1.0
OE2 B:GLU62 3.3 32.3 1.0
OE2 B:GLU27 3.3 20.7 1.0
O B:HOH601 3.5 25.7 1.0
CB B:HIS65 3.5 13.2 1.0
OE1 B:GLN141 4.0 28.3 1.0
O B:HOH631 4.0 35.2 1.0
NE2 B:HIS65 4.2 21.8 1.0
CG1 B:VAL110 4.2 16.8 1.0
CD2 B:HIS65 4.3 20.5 1.0
CG B:GLU27 4.4 16.9 1.0
CG B:GLU62 4.5 17.0 1.0
CA B:GLU62 4.5 12.0 1.0
CB B:GLU62 4.7 12.6 1.0
CB B:GLU27 4.8 12.1 1.0
O B:HOH602 4.8 40.3 1.0
CD B:GLN141 4.9 21.3 1.0

Sodium binding site 3 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 3 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na500

b:4.1
occ:1.00
 O C:HOH613 2.0 29.8 1.0
OE1 C:GLU27 2.1 22.5 1.0
ND1 C:HIS65 2.1 22.3 1.0
O C:HOH606 2.1 21.8 1.0
OE1 C:GLU62 2.2 25.7 1.0
CD C:GLU27 3.0 21.6 1.0
CE1 C:HIS65 3.1 22.1 1.0
CD C:GLU62 3.1 23.7 1.0
CG C:HIS65 3.2 17.9 1.0
OE2 C:GLU62 3.3 32.3 1.0
OE2 C:GLU27 3.3 20.7 1.0
O C:HOH601 3.5 25.7 1.0
CB C:HIS65 3.5 13.2 1.0
OE1 C:GLN141 4.0 28.3 1.0
O C:HOH631 4.0 35.3 1.0
NE2 C:HIS65 4.2 21.8 1.0
CG1 C:VAL110 4.2 16.8 1.0
CD2 C:HIS65 4.3 20.5 1.0
CG C:GLU27 4.4 16.9 1.0
CG C:GLU62 4.5 17.0 1.0
CA C:GLU62 4.5 12.0 1.0
CB C:GLU62 4.7 12.6 1.0
CB C:GLU27 4.8 12.1 1.0
O C:HOH602 4.8 40.3 1.0
CD C:GLN141 4.9 21.3 1.0

Sodium binding site 4 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 4 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na500

b:4.1
occ:1.00
 O D:HOH612 2.0 29.8 1.0
OE1 D:GLU27 2.1 22.5 1.0
ND1 D:HIS65 2.1 22.2 1.0
O D:HOH606 2.1 21.7 1.0
OE1 D:GLU62 2.2 25.7 1.0
CD D:GLU27 3.0 21.6 1.0
CE1 D:HIS65 3.1 22.1 1.0
CD D:GLU62 3.1 23.7 1.0
CG D:HIS65 3.2 17.9 1.0
OE2 D:GLU62 3.3 32.3 1.0
OE2 D:GLU27 3.3 20.7 1.0
O D:HOH601 3.5 25.7 1.0
CB D:HIS65 3.5 13.2 1.0
OE1 D:GLN141 4.0 28.3 1.0
O D:HOH631 4.0 35.3 1.0
NE2 D:HIS65 4.2 21.8 1.0
CG1 D:VAL110 4.2 16.8 1.0
CD2 D:HIS65 4.3 20.5 1.0
CG D:GLU27 4.4 16.9 1.0
CG D:GLU62 4.5 17.0 1.0
CA D:GLU62 4.5 12.0 1.0
CB D:GLU62 4.7 12.6 1.0
CB D:GLU27 4.8 12.1 1.0
O D:HOH602 4.8 40.4 1.0
CD D:GLN141 4.9 21.3 1.0

Sodium binding site 5 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 5 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na500

b:4.1
occ:1.00
 O E:HOH612 2.0 29.8 1.0
OE1 E:GLU27 2.1 22.5 1.0
ND1 E:HIS65 2.1 22.2 1.0
O E:HOH606 2.1 21.7 1.0
OE1 E:GLU62 2.2 25.7 1.0
CD E:GLU27 3.0 21.6 1.0
CE1 E:HIS65 3.1 22.1 1.0
CD E:GLU62 3.1 23.7 1.0
CG E:HIS65 3.2 17.9 1.0
OE2 E:GLU62 3.3 32.3 1.0
OE2 E:GLU27 3.3 20.7 1.0
O E:HOH601 3.5 25.7 1.0
CB E:HIS65 3.5 13.2 1.0
OE1 E:GLN141 4.0 28.3 1.0
O E:HOH631 4.0 35.3 1.0
NE2 E:HIS65 4.2 21.8 1.0
CG1 E:VAL110 4.2 16.8 1.0
CD2 E:HIS65 4.3 20.5 1.0
CG E:GLU27 4.4 16.9 1.0
CG E:GLU62 4.5 17.0 1.0
CA E:GLU62 4.5 12.0 1.0
CB E:GLU62 4.7 12.6 1.0
CB E:GLU27 4.8 12.1 1.0
O E:HOH602 4.8 40.4 1.0
CD E:GLN141 4.9 21.3 1.0

Sodium binding site 6 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 6 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Na500

b:4.0
occ:1.00
 O F:HOH613 2.0 29.8 1.0
OE1 F:GLU27 2.1 22.5 1.0
ND1 F:HIS65 2.1 22.2 1.0
O F:HOH606 2.1 21.8 1.0
OE1 F:GLU62 2.2 25.7 1.0
CD F:GLU27 3.0 21.6 1.0
CE1 F:HIS65 3.1 22.1 1.0
CD F:GLU62 3.1 23.7 1.0
CG F:HIS65 3.2 17.9 1.0
OE2 F:GLU62 3.3 32.3 1.0
OE2 F:GLU27 3.3 20.7 1.0
O F:HOH601 3.5 25.7 1.0
CB F:HIS65 3.5 13.2 1.0
OE1 F:GLN141 4.0 28.3 1.0
O F:HOH631 4.0 35.2 1.0
NE2 F:HIS65 4.2 21.8 1.0
CG1 F:VAL110 4.2 16.8 1.0
CD2 F:HIS65 4.3 20.5 1.0
CG F:GLU27 4.4 16.9 1.0
CG F:GLU62 4.5 17.0 1.0
CA F:GLU62 4.5 12.0 1.0
CB F:GLU62 4.7 12.6 1.0
CB F:GLU27 4.8 12.1 1.0
O F:HOH602 4.8 40.4 1.0
CD F:GLN141 4.9 21.3 1.0

Sodium binding site 7 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 7 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Na500

b:4.0
occ:1.00
 O G:HOH613 2.0 29.8 1.0
OE1 G:GLU27 2.1 22.5 1.0
ND1 G:HIS65 2.1 22.2 1.0
O G:HOH606 2.1 21.8 1.0
OE1 G:GLU62 2.2 25.7 1.0
CD G:GLU27 3.0 21.6 1.0
CE1 G:HIS65 3.1 22.1 1.0
CD G:GLU62 3.1 23.7 1.0
CG G:HIS65 3.2 17.8 1.0
OE2 G:GLU62 3.3 32.3 1.0
OE2 G:GLU27 3.3 20.7 1.0
O G:HOH601 3.5 25.7 1.0
CB G:HIS65 3.5 13.2 1.0
OE1 G:GLN141 4.0 28.3 1.0
O G:HOH631 4.0 35.2 1.0
NE2 G:HIS65 4.2 21.8 1.0
CG1 G:VAL110 4.2 16.8 1.0
CD2 G:HIS65 4.3 20.5 1.0
CG G:GLU27 4.4 16.9 1.0
CG G:GLU62 4.5 17.0 1.0
CA G:GLU62 4.5 12.0 1.0
CB G:GLU62 4.7 12.6 1.0
CB G:GLU27 4.8 12.1 1.0
O G:HOH602 4.8 40.3 1.0
CD G:GLN141 4.9 21.3 1.0

Sodium binding site 8 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 8 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Na500

b:4.1
occ:1.00
 O H:HOH613 2.0 29.8 1.0
OE1 H:GLU27 2.1 22.5 1.0
ND1 H:HIS65 2.1 22.2 1.0
O H:HOH606 2.1 21.7 1.0
OE1 H:GLU62 2.2 25.7 1.0
CD H:GLU27 3.0 21.6 1.0
CE1 H:HIS65 3.1 22.1 1.0
CD H:GLU62 3.1 23.7 1.0
CG H:HIS65 3.2 17.8 1.0
OE2 H:GLU62 3.3 32.3 1.0
OE2 H:GLU27 3.3 20.7 1.0
O H:HOH601 3.5 25.7 1.0
CB H:HIS65 3.5 13.2 1.0
OE1 H:GLN141 4.0 28.3 1.0
O H:HOH631 4.0 35.3 1.0
NE2 H:HIS65 4.2 21.8 1.0
CG1 H:VAL110 4.2 16.8 1.0
CD2 H:HIS65 4.3 20.5 1.0
CG H:GLU27 4.4 16.9 1.0
CG H:GLU62 4.5 17.0 1.0
CA H:GLU62 4.5 12.0 1.0
CB H:GLU62 4.7 12.6 1.0
CB H:GLU27 4.8 12.1 1.0
O H:HOH602 4.8 40.3 1.0
CD H:GLN141 4.9 21.3 1.0

Sodium binding site 9 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 9 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Na500

b:4.0
occ:1.00
 O I:HOH612 2.0 29.8 1.0
OE1 I:GLU27 2.1 22.5 1.0
ND1 I:HIS65 2.1 22.2 1.0
O I:HOH605 2.1 21.8 1.0
OE1 I:GLU62 2.2 25.7 1.0
CD I:GLU27 3.0 21.6 1.0
CE1 I:HIS65 3.1 22.1 1.0
CD I:GLU62 3.1 23.7 1.0
CG I:HIS65 3.2 17.9 1.0
OE2 I:GLU62 3.3 32.3 1.0
OE2 I:GLU27 3.3 20.7 1.0
O I:HOH601 3.5 25.7 1.0
CB I:HIS65 3.5 13.2 1.0
OE1 I:GLN141 4.0 28.2 1.0
O I:HOH630 4.0 35.3 1.0
NE2 I:HIS65 4.2 21.8 1.0
CG1 I:VAL110 4.2 16.8 1.0
CD2 I:HIS65 4.3 20.5 1.0
CG I:GLU27 4.4 16.9 1.0
CG I:GLU62 4.5 17.0 1.0
CA I:GLU62 4.5 12.0 1.0
CB I:GLU62 4.7 12.6 1.0
CB I:GLU27 4.8 12.1 1.0
O I:HOH602 4.8 40.4 1.0
CD I:GLN141 4.9 21.3 1.0

Sodium binding site 10 out of 24 in 7r5o

Go back to Sodium Binding Sites List in 7r5o
Sodium binding site 10 out of 24 in the 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Na500

b:4.0
occ:1.00
 O J:HOH611 2.0 29.7 1.0
OE1 J:GLU27 2.1 22.5 1.0
ND1 J:HIS65 2.1 22.2 1.0
O J:HOH605 2.1 21.8 1.0
OE1 J:GLU62 2.2 25.7 1.0
CD J:GLU27 3.0 21.6 1.0
CE1 J:HIS65 3.1 22.1 1.0
CD J:GLU62 3.1 23.7 1.0
CG J:HIS65 3.2 17.9 1.0
OE2 J:GLU62 3.3 32.3 1.0
OE2 J:GLU27 3.3 20.7 1.0
O J:HOH601 3.5 25.7 1.0
CB J:HIS65 3.5 13.2 1.0
OE1 J:GLN141 4.0 28.3 1.0
O J:HOH630 4.0 35.3 1.0
NE2 J:HIS65 4.2 21.8 1.0
CG1 J:VAL110 4.2 16.8 1.0
CD2 J:HIS65 4.3 20.5 1.0
CG J:GLU27 4.4 16.9 1.0
CG J:GLU62 4.5 17.0 1.0
CA J:GLU62 4.5 12.0 1.0
CB J:GLU62 4.7 12.6 1.0
CB J:GLU27 4.8 12.1 1.0
O J:HOH602 4.8 40.4 1.0
CD J:GLN141 4.9 21.3 1.0

Reference:

D.K.Clare, D.K.Clare. N/A N/A.
Page generated: Fri Apr 7 15:55:17 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy