Sodium in PDB 7qha: Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol

The binding sites of Sodium atom in the Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol (pdb code 7qha). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol, PDB code: 7qha:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:100.9 occ:1.00 O B:SER103 2.3 148.8 1.0 O B:PRO150 2.3 145.8 1.0 O B:SER106 2.4 156.8 1.0 O B:GLY145 2.5 147.0 1.0 O B:VAL148 2.7 139.8 1.0 C B:GLY145 3.4 147.0 1.0 C B:SER106 3.4 156.8 1.0 C B:SER103 3.4 148.8 1.0 OG B:SER103 3.5 148.8 1.0 C B:PRO150 3.5 145.8 1.0 CA B:GLY107 3.8 156.8 1.0 CA B:GLY145 3.9 147.0 1.0 C B:VAL148 3.9 139.8 1.0 N B:PRO150 4.0 145.8 1.0 N B:GLY107 4.0 156.8 1.0 CA B:SER103 4.0 148.8 1.0 C B:PRO149 4.1 144.5 1.0 CD B:PRO150 4.2 145.8 1.0 CA B:PRO150 4.4 145.8 1.0 CB B:SER103 4.4 148.8 1.0 O B:PRO149 4.4 144.5 1.0 N B:PRO146 4.5 146.3 1.0 N B:SER151 4.5 144.0 1.0 N B:SER106 4.5 156.8 1.0 N B:GLY104 4.6 150.0 1.0 CA B:SER106 4.6 156.8 1.0 CA B:SER151 4.6 144.0 1.0 C B:GLY107 4.7 156.8 1.0 CA B:PRO149 4.7 144.5 1.0 CG B:PRO150 4.7 145.8 1.0 CB B:SER151 4.7 144.0 1.0 N B:PRO149 4.7 144.5 1.0 CA B:VAL148 4.8 139.8 1.0 N B:VAL148 4.8 139.8 1.0 CA B:GLY104 4.9 150.0 1.0 CA B:PRO146 4.9 146.3 1.0 O B:ILE144 4.9 145.3 1.0 OG B:SER106 4.9 156.8 1.0 CB B:VAL148 4.9 139.8 1.0

Sodium binding site 2 out of 2 in the Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:100.9 occ:1.00 O B:THR369 2.4 140.6 1.0 O B:MET372 2.4 152.1 1.0 OG1 B:THR369 2.5 140.6 1.0 O B:GLY366 2.6 137.5 1.0 O B:GLY325 2.9 131.4 1.0 C B:THR369 3.3 140.6 1.0 N B:THR369 3.5 140.6 1.0 C B:MET372 3.6 152.1 1.0 CB B:THR369 3.6 140.6 1.0 O B:THR326 3.7 136.4 1.0 CA B:THR369 3.7 140.6 1.0 CA B:THR326 3.8 136.4 1.0 C B:GLY366 3.8 137.5 1.0 C B:GLY325 3.9 131.4 1.0 C B:THR326 4.0 136.4 1.0 C B:ILE367 4.2 138.3 1.0 CA B:ILE367 4.3 138.3 1.0 N B:THR326 4.3 136.4 1.0 CE B:MET372 4.4 152.1 1.0 C B:LEU368 4.4 138.0 1.0 O B:ILE367 4.4 138.3 1.0 CA B:MET372 4.4 152.1 1.0 N B:PRO370 4.5 144.1 1.0 N B:MET372 4.5 152.1 1.0 N B:LEU368 4.5 138.0 1.0 N B:ILE367 4.5 138.3 1.0 N B:GLY373 4.6 158.6 1.0 CB B:MET372 4.6 152.1 1.0 SD B:MET372 4.6 152.1 1.0 CG2 B:THR369 4.6 140.6 1.0 O B:PRO370 4.6 144.1 1.0 CA B:GLY373 4.6 158.6 1.0 C B:PRO370 4.7 144.1 1.0 CA B:GLY366 4.8 137.5 1.0 CA B:PRO370 4.9 144.1 1.0 CB B:THR326 4.9 136.4 1.0

J.S.Davies, M.J.Currie, R.A.North, J.Wright, M.Scalise, J.M.Copping, D.M.Remus, A.Gulati, D.Morado, S.A.Jamieson, G.Sampath, S.Ramaswamy, R.Friemann, S.Wakatsuki, J.R.Allison, C.Indiveri, D.Drew, P.D.Mace, R.C.J.Dobson. Structure and Mechanism of the Tripartite Atp -Independent Periplasmic (Trap) Transporter To Be Published.