Sodium in PDB 7qh0: Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation

Enzymatic activity of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation

All present enzymatic activity of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation:
5.3.1.1;

Protein crystallography data

The structure of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation, PDB code: 7qh0 was solved by G.Cordara, R.K.Wierenga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.53 / 2.15
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.815, 73.898, 81.08, 83.12, 89.33, 77.11
R / Rfree (%) 23.5 / 27.8

Other elements in 7qh0:

The structure of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation (pdb code 7qh0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation, PDB code: 7qh0:

Sodium binding site 1 out of 1 in 7qh0

Go back to Sodium Binding Sites List in 7qh0
Sodium binding site 1 out of 1 in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na301

b:19.1
occ:1.00
 O D:HOH445 2.4 12.8 1.0
O D:TRP159 2.5 19.6 1.0
O D:VAL162 3.0 17.3 1.0
C D:TRP159 3.6 18.4 1.0
CA D:ASN160 3.7 21.4 1.0
CD1 D:LEU206 3.9 13.3 1.0
C D:ASN160 3.9 20.5 1.0
CA D:LEU206 3.9 15.3 1.0
O D:ASN160 4.0 20.5 1.0
N D:ASN160 4.1 19.9 1.0
C D:VAL162 4.1 17.6 1.0
N D:VAL162 4.2 19.9 1.0
O D:LYS205 4.2 18.1 1.0
O D:HOH403 4.5 17.2 1.0
CB D:LEU206 4.5 15.7 1.0
N D:LEU206 4.5 15.6 1.0
CA D:VAL162 4.6 16.4 1.0
C D:LYS205 4.6 18.4 1.0
OD1 D:ASN160 4.6 29.1 1.0
N D:GLN161 4.6 17.5 1.0
N D:ARG207 4.7 13.1 1.0
CA D:TRP159 4.8 19.5 1.0
CB D:VAL162 4.8 18.0 1.0
CG D:LEU206 4.9 15.6 1.0
C D:LEU206 4.9 16.8 1.0

Reference:

G.Cordara, R.K.Wierenga. Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation To Be Published.
Page generated: Wed Oct 9 08:21:52 2024

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