Sodium in PDB 7q78: Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary

Enzymatic activity of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary

All present enzymatic activity of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary:
4.6.1.18;

Protein crystallography data

The structure of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q78 was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.83 / 1.52
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.28, 64.28, 65.02, 90, 90, 120
R / Rfree (%) 15.3 / 18.3

Other elements in 7q78:

The structure of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q78). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q78:

Sodium binding site 1 out of 1 in 7q78

Go back to Sodium Binding Sites List in 7q78
Sodium binding site 1 out of 1 in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:35.1
occ:1.00
H A:ALA5 2.3 23.6 1.0
O3 A:SO4202 2.3 84.5 1.0
O A:HOH349 2.9 35.0 1.0
HB A:THR3 2.9 20.1 1.0
HB3 A:ALA4 3.0 29.6 1.0
H A:ALA4 3.1 22.5 1.0
N A:ALA5 3.1 19.7 1.0
HB2 A:ALA5 3.1 22.8 1.0
HB3 A:ALA5 3.2 22.8 1.0
N A:ALA4 3.5 18.7 1.0
CB A:ALA5 3.5 19.0 1.0
S A:SO4202 3.5 84.3 1.0
O2 A:SO4202 3.7 66.3 1.0
CB A:THR3 3.8 16.8 1.0
CB A:ALA4 3.9 24.7 1.0
CA A:ALA5 3.9 17.6 1.0
CA A:ALA4 4.0 18.9 1.0
C A:ALA4 4.0 16.2 1.0
HG1 A:THR3 4.0 23.0 1.0
OG1 A:THR3 4.0 19.2 1.0
HG12 A:VAL118 4.2 25.6 1.0
O4 A:SO4202 4.2 88.8 1.0
C A:THR3 4.3 18.8 1.0
O A:HOH326 4.3 34.8 1.0
HB2 A:ALA4 4.3 29.6 1.0
HG11 A:VAL118 4.4 25.6 1.0
HB1 A:ALA5 4.4 22.8 1.0
HA A:ALA5 4.4 21.1 1.0
HB1 A:ALA4 4.5 29.6 1.0
H A:ALA6 4.5 18.7 1.0
CA A:THR3 4.6 18.6 1.0
O1 A:SO4202 4.6 81.5 1.0
O A:HOH380 4.7 42.3 1.0
HA A:THR3 4.7 22.3 1.0
O A:HOH357 4.7 19.0 1.0
CG1 A:VAL118 4.8 21.3 1.0
CG2 A:THR3 4.8 22.4 1.0
HG21 A:THR3 4.8 26.9 1.0
HG22 A:THR3 4.9 26.9 1.0
HA A:ALA4 4.9 22.7 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Tue Oct 8 18:36:43 2024

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