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Sodium in PDB 7q1k: Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus

Enzymatic activity of Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus

All present enzymatic activity of Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus:
3.2.1.4;

Protein crystallography data

The structure of Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus, PDB code: 7q1k was solved by W.Yu, I.Mohsin, D.C.Li, A.C.Papageorgiou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.27 / 1.36
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.69, 64.191, 88.533, 90, 90, 90
R / Rfree (%) 15.1 / 18.5

Other elements in 7q1k:

The structure of Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus also contains other interesting chemical elements:

Copper (Cu) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus (pdb code 7q1k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus, PDB code: 7q1k:

Sodium binding site 1 out of 1 in 7q1k

Go back to Sodium Binding Sites List in 7q1k
Sodium binding site 1 out of 1 in the Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Native AA9A Lpmo From Thermoascus Aurantiacus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:31.5
occ:1.00
 O A:LEU225 2.5 16.2 1.0
CG2 A:THR227 2.7 30.0 1.0
O A:HOH509 3.1 40.5 1.0
OG1 A:THR227 3.4 32.6 1.0
C A:LEU225 3.5 15.2 1.0
CB A:THR227 3.5 29.8 1.0
N A:THR227 3.6 21.1 1.0
C A:TYR226 3.9 19.4 1.0
CG A:LEU225 4.0 15.4 1.0
CB A:LEU225 4.0 14.7 1.0
O A:HOH600 4.1 24.9 1.0
CA A:THR227 4.2 26.0 1.0
CD2 A:LEU225 4.3 17.0 1.0
N A:TYR226 4.3 15.8 1.0
CA A:LEU225 4.3 14.6 1.0
CA A:TYR226 4.3 16.6 1.0
O A:TYR226 4.4 20.6 1.0
O A:HOH684 4.5 38.4 1.0
N A:LEU225 4.8 14.6 1.0

Reference:

W.Yu, I.Mohsin, A.C.Papageorgiou, D.Li. Purification and Structural Characterization of the Auxiliary Activity 9 Native Lytic Polysaccharide Monooxygenase From Thermoascus Aurantiacus and Identification of Its C1- and C4-Oxidized Reaction Products Catalysts V. 12 2022.
ISSN: ESSN 2073-4344
DOI: 10.3390/CATAL12020139
Page generated: Fri Apr 7 15:40:55 2023

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