Atomistry » Sodium » PDB 7p8p-7q1k » 7q0u
Atomistry »
  Sodium »
    PDB 7p8p-7q1k »
      7q0u »

Sodium in PDB 7q0u: Lysozyme Soaked with V(IV)OSO4 and Bipy

Enzymatic activity of Lysozyme Soaked with V(IV)OSO4 and Bipy

All present enzymatic activity of Lysozyme Soaked with V(IV)OSO4 and Bipy:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Soaked with V(IV)OSO4 and Bipy, PDB code: 7q0u was solved by M.F.A.Santos, A.C.P.Fernandes, I.Correia, G.Sciortino, E.Garribba, T.Santos-Silva, J.C.Pessoa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.10 / 1.19
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.14, 76.14, 37.008, 90, 90, 90
R / Rfree (%) 12.8 / 15.6

Other elements in 7q0u:

The structure of Lysozyme Soaked with V(IV)OSO4 and Bipy also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms
Vanadium (V) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Soaked with V(IV)OSO4 and Bipy (pdb code 7q0u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Soaked with V(IV)OSO4 and Bipy, PDB code: 7q0u:

Sodium binding site 1 out of 1 in 7q0u

Go back to Sodium Binding Sites List in 7q0u
Sodium binding site 1 out of 1 in the Lysozyme Soaked with V(IV)OSO4 and Bipy


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Soaked with V(IV)OSO4 and Bipy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na209

b:18.3
occ:1.00
O A:SER60 2.3 18.4 1.0
O A:HOH357 2.4 20.4 1.0
O A:ARG73 2.4 20.9 1.0
O A:CYS64 2.4 15.3 1.0
O A:HOH339 2.5 16.4 1.0
OG A:SER72 2.5 21.6 1.0
CB A:SER72 3.3 20.6 1.0
C A:SER60 3.5 16.5 1.0
C A:ARG73 3.5 20.9 1.0
C A:CYS64 3.5 15.5 1.0
CA A:ASN65 3.9 15.8 1.0
N A:ARG73 3.9 20.2 1.0
CA A:SER60 4.0 14.7 1.0
C A:SER72 4.1 20.5 1.0
N A:ASN65 4.1 15.8 1.0
CB A:SER60 4.2 14.8 1.0
CA A:ARG73 4.3 21.5 1.0
CA A:SER72 4.3 21.1 1.0
N A:ASN74 4.3 20.3 1.0
N A:CYS64 4.5 15.7 1.0
O A:HOH382 4.5 33.4 1.0
CA A:ASN74 4.6 18.5 1.0
N A:ARG61 4.6 17.3 1.0
C A:ARG61 4.6 17.4 1.0
OD1 A:ASN65 4.6 18.9 1.0
CA A:CYS64 4.6 15.2 1.0
N A:ASP66 4.6 14.4 1.0
O A:ARG61 4.6 19.4 1.0
O A:SER72 4.6 23.9 1.0
CL A:CL204 4.7 19.8 1.0
CB A:ASN74 4.7 18.6 1.0
CB A:THR69 4.7 18.4 1.0
CB A:ASN65 4.8 17.3 1.0
C A:ASN65 4.8 14.3 1.0
N A:TRP62 4.9 17.6 1.0
CA A:ARG61 4.9 18.6 1.0

Reference:

M.F.A.Santos, G.Sciortino, I.Correia, A.C.P.Fernandes, T.Santos-Silva, F.Pisanu, E.Garribba, J.Costa Pessoa. Binding of V IV O 2+ , V IV Ol, V IV Ol 2 and V V O 2 L Moieties to Proteins: X-Ray/Theoretical Characterization and Biological Implications. Chemistry V. 28 00105 2022.
ISSN: ISSN 0947-6539
PubMed: 35486702
DOI: 10.1002/CHEM.202200105
Page generated: Fri Apr 7 15:38:41 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy